Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq86 260 2e-64 seq46 145 9e-30 seq62 82.4 9e-11 >seq86 Length=170212 Score = 260 bits (288), Expect = 2e-64 Identities = 1128/1751 (64%), Gaps = 57/1751 (3%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 |||||||||||||| || |||||||| ||| ||||||| | | |||||| || Sbjct 128012 CGGAGGTAGTACATGCCGGTCTTGAGACCCATCTTCCAGCCGGCGAAATGCATGCTGGTA 127953 Query 113657 AACTTGGAGAGTGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 113715 | |||| | || ||| | | |||| | ||| | ||||| ||||| ||||| Sbjct 127952 ATCTTGCCCA-TGGTGGGTTCGCGCATGTGAATGTTGAGGGACTGGGACTGATCAATGAA 127894 Query 113716 GCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTT 113773 | |||||||| || ||||| | | || || | | || | ||||| || || Sbjct 127893 GGCACCACGATCGGCAGCCATCTTGA-CA-ATGGTACGCTGAGAAATCTCCCAGACGGTC 127836 Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCAC--GATATTTTGGATGGAGCCACCCG 113831 | ||||| ||| || |||| ||||| || | ||| || ||||| || || ||| Sbjct 127835 TTATAGAGAGCCTTGATGTCAT-TGGGA-ATGCTTTGGATGTTCTGGATAGAACCGCCCT 127778 Query 113832 CCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCA 113891 | | ||| | | |||||| | | ||||| || || |||| |||||| Sbjct 127777 CAGCAATGATGCGGTTCTTCATGGCATCAGACCAAAGGCCCATCTCCACAAGATCCCT-- 127720 Query 113892 CGAGATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATAT 113948 |||| || ||||| || ||||| || ||||| |||| | ||||| | Sbjct 127719 -GAGAAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGCACACGTCGTTGGTAGATGT 127661 Query 113949 TGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGG 114008 | | ||||| ||||| |||||||| ||||| || | || || | ||||| || |||| Sbjct 127660 TAGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGAGAAGTGGAAGCAGTGG 127601 Query 114009 GCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGG 114068 |||| || || | || || ||||| || | ||| | | | | ||| ||||||| | Sbjct 127600 GCATAGGAGCAAGCAGCAGACTGTTGCGAACACCGTACTTCTTGATGTCCGCCTTGAGAG 127541 Query 114069 CGTCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTGCCACATATCAAACTGGAGGATAC 114125 | |||||| || || || || | | |||||| || | |||||||| | Sbjct 127540 CAGTCCAGTCCCAG---AGGTTGGTAGGGGTGACGTTCCACATGTCGTATTGGAGGATTC 127484 Query 114126 CTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGG 114185 | |||||| | ||||| || || | || |||| ||||||| ||| || | | | Sbjct 127483 CCTGGGAGACGGGCGAGCCTTCGTAGGTGGCGTACGGGCCCTGCTCCTTGGCGAGCTGGC 127424 Query 114186 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA--TTGCCTT 114243 | || || || ||||| || || ||||| ||||| | || | |||| | Sbjct 127423 AAGAGGCAGTAAGAGCGGCGTGGTAGATGGTCTCGAAAATCTGGATGTTGAGCTTGC--T 127366 Query 114244 GGCCTCGTCGGAATCAAACGCGAGTCGGC-ACAAAATAAATACATCCGCGAGACCTTGGA 114302 ||| |||| ||||| || | | ||| | || ||| |||| || ||||| || | Sbjct 127365 AGCCGCGTCAGAATCGAAGGGCATGCGGAGAGCCAAGAAAG-CATCAGCAAGACCCTGAA 127307 Query 114303 CACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGAT 114359 |||||| ||||| || || || | ||| || || | | | || |||| ||||| | Sbjct 127306 CACCGACACCAATGGGACGGTGACGCATGTTG--CTGTTGTG-GGCCTCCTTAACGGGGT 127250 Query 114360 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 114419 | || | || || | | | || || || | ||| || | |||| || || | Sbjct 127249 AGTGGTTGATGTCAATGATCTTGTTGAGGTTGCGGACGACGACTTGAGTGACCTCGTGCA 127190 Query 114420 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACG 114479 |||| | | | || || | | |||| | | || | | | |||||||| || | Sbjct 127189 GCTTCTTGAAGTCGTAAGAGGCATTCTCGTAGTCGATAAAGGCGGAAAGGGCGAGAGAGG 127130 Query 114480 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAAT 114539 | || || || || | ||||||| | ||| |||||| ||||| || || |||| | Sbjct 127129 CAAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTCAGTGCACAGGT 127070 Query 114540 TTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGT 114599 | || || ||||| |||| |||||| || || ||| ||| || |||||||||| Sbjct 127069 TGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGGCATCCTTGT 127010 Query 114600 AAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCG 114658 | |||||| | || | |||||||| || |||| || ||| || || | ||| | | || Sbjct 127009 AGAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCT 126950 Query 114659 GCGGCTGGCACAGTG--GCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716 | | || | || || ||| || ||| |||| ||||||||| ||| || |||| Sbjct 126949 GGGCCTTG-ACGGTCTTGCGACC-CTTGCCT-TCCTTTTCGTACTTTTCGTACAGAGCTT 126893 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 114776 | ||||| ||||| | || | || || || || | ||||| | ||||| || Sbjct 126892 CGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCACATGAGAGTCC 126833 Query 114777 ATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGA 114836 | || || || |||||||||||||||||| || || ||||||||||| || ||||| Sbjct 126832 ACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCAAGGAAGA 126773 Query 114837 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 114896 |||| ||| ||| | ||||| | || || || || | || | || || | || Sbjct 126772 GATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAGGAACTCGAAGA 126713 Query 114897 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAG 114950 ||| |||||||| || || ||||| | |||| | || | |||| ||| Sbjct 126712 CATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACC---AGGACGCTTGTTGCCAC 126656 Query 114951 CCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAG 115010 |||||| || || | || ||| || || || || ||||| |||| |||||| | | Sbjct 126655 CCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTTGG 126596 Query 115011 ATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATGTGCAT 115068 || ||| || || || ||| || ||| | | |||| | | ||||||| | Sbjct 126595 ATGTGCCGTTGGTACCAGCGATGTAGGAGCC--AGTGGCACGAATGCGGTGGATGTTGAG 126538 Query 115069 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 115128 ||| ||||| || ||| ||| ||||| ||||| | |||| | ||||||| || Sbjct 126537 ACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTAGATGCC 126478 Query 115129 GTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 115188 ||||| ||| |||| | ||| |||||||| || | || ||| || || Sbjct 126477 CTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAGT 126418 Query 115189 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTT--GGGACATCTTATCG 115246 ||| |||||||||||||| || | |||||| |||| | ||| ||||||| | | Sbjct 126417 ACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAAGGT--CTTGAGGGACATGAGGTTG 126360 Query 115247 TAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAAC 115306 || ||||| | ||| || ||| || || ||||||| | || ||||| | | Sbjct 126359 TAAGTCTCAATGACCCGCTCAACGTCGTCTCCCCAGATACCGACAGCAACACGCATGATC 126300 Query 115307 ATGTATTGGGG 115317 |||| ||||| Sbjct 126299 ATGTGCTGGGG 126289 >seq46 Length=277877 Score = 145 bits (160), Expect = 9e-30 Identities = 526/813 (65%), Gaps = 15/813 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| ||||| ||||||||||||||||| ||||| || | | || |||||||| Sbjct 255869 GTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCAT 255928 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 125876 || || || ||||| | || | | || | | | || | | ||||||| Sbjct 255929 GAAGTCGAAGGGGTTAGTCGACCTGTAGATCTTCTCGTTGCCGAGGGCGACA-AGGAGAC 255987 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||| | |||| |||| ||||||| ||| || | |||||| || | ||| | Sbjct 255988 GATCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGAAGGGCGC 256047 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | ||||| || || || |||| ||| ||||||| ||||| || | ||| | | Sbjct 256048 AAGGGAGGGCCTCAGTGAGGAACTCCTGCTCAATTCTGACGGCATCGACAATGATTTCCT 256107 Query 125997 GAATGGTGTCCACCCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 126053 | || | | | || | | ||| | || |||||| |||||| | Sbjct 256108 GGATCAGCTGCTTGCTGGGGCGGTTGTTGAGGTGAGA---GAAGAGAAGGCAGGCAAAGT 256164 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | |||||||||||| |||||||||||||| || || || ||| || || ||||||| Sbjct 256165 CGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAAAAGGTAAGGCCAGGCATGA 256224 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 |||| |||||||| | |||||| || | || | ||| ||||||||| ||||| | Sbjct 256225 GACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATACCCTCGA 256284 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGT-GTCAAACCACTTC 126232 | || || || | |||||||| ||||||| | | | |||| | || ||| Sbjct 256285 CGGCAGCAAAGGCGACGAGACGCTGGGCAAAGGTG-GAGCTCTTGTCGGTAATCCAGCGA 256343 Query 126233 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCC 126292 | ||||| | |||||||| ||| || |||| ||| | || || | ||||| | Sbjct 256344 AGAGCCCAGTCAGCCTTTTTGCGGATGCAAGGGATGGTGTCAATAGCGTTGAAGAGGTAG 256403 Query 126293 TTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGG 126352 || | | || || || |||||||| | || ||||| || || || ||| ||| Sbjct 256404 GTCCTCTGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGA 256463 Query 126353 ACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 126411 | | | ||| || | ||| | ||||||| |||| || ||| ||||| || || Sbjct 256464 ATGTTCTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATCTGGACTTC 256522 Query 126412 ATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 126471 | || | || |||||| ||||| |||||||| |||| || || || Sbjct 256523 GCCACTGAAGCGCTCGACGAGGTTCTCATTGACAATACCATCGGAGGCAGCGAAGAAAGC 256582 Query 126472 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAG 126528 || || | ||||| || || | ||||||| | | |||||||||| ||| Sbjct 256583 GAGAATGTGGGAGATGAAGAACTTCTCGTCGTCGTTCAACCTGTTGTTCCAGTCGTGAAG 256642 Query 126529 ATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 126561 ||||| |||||||| | |||||| || ||||| Sbjct 256643 GTCCTTGGAGAGATCAATCTCCTCGGCGGTCCA 256675 >seq62 Length=222237 Score = 82.4 bits (90), Expect = 9e-11 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 10960 ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 11019 ||| | ||| || |||||||||||||| | ||| || || || | || || | Sbjct 125252 ACCAATGGCATCGATTTCATCGATGAAGATGATGCAGGGAGCGTTCTTCCGCGCCGTGGC 125311 Query 11020 AAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG--CG 11077 ||||| ||| ||||| | ||||||||||| |||||||| || || || | || | Sbjct 125312 AAAGAGATCACGGACACGGGACGCACCGACACCGACAAACATCTCGACGAATTCGGAACC 125371 Query 11078 GCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11137 || | ||| | || |||||| || | |||||||| || | || ||| || || ||| Sbjct 125372 GCTG-ACACT-GAAGAAGGGAACCTGCGATTCACCGGCAGTCGCCTTGGCAAGCAGAGTC 125429 Query 11138 TTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 || || || || || || | || | |||||||| |||||| ||||||| Sbjct 125430 TTACCGGTACCGGGGGGACCAGACAGGATAGCACCACGAGGGATCTTGGCACC 125482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350926842640