Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq18 150 2e-31 seq81 96.9 3e-15 seq43 93.3 4e-14 >seq18 Length=383124 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||| || ||||||| || || || || ||||||||||| || Sbjct 57454 ACCACCGCGTAGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCT 57395 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||||||||||||||||||||| ||||||| |||||||| |||||||| Sbjct 57394 CAAAGTGCGGCCGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGG 57335 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || ||||| || |||||||| || || | || || | ||||| Sbjct 57334 AATGCCCTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCAC 57275 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | ||| || ||||| |||||||| Sbjct 57274 CTCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 Score = 109 bits (120), Expect = 5e-19 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | || || || || | || || || || || |||||||| || | Sbjct 57226 ACCACCGCGCAGGCGGAGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 57167 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || | ||||||||||||| |||| | |||||||||||||| || Sbjct 57166 AAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGG 57107 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCC 64393 ||| || || || || || || |||||||| ||| || | ||||| || || || Sbjct 57106 AATGCCCTCCTTGTCCTGAATCTTTTGCTTGACATTGTCAATGGTATC--CGACGACTCG 57049 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCA 64421 || || | || | |||||||||||||| Sbjct 57048 ACCTCGAGGGTGATGGTCTTGCCGGTCA 57021 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || ||||||||||| || | || |||||| | || || |||||||| || || || Sbjct 57645 TCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAA 57586 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| |||||||| || || || || || || || || || || ||||||||||| Sbjct 57585 ATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGGATCTTTTGCTTTACGTTG 57526 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | || || || | ||| | ||||||||||| | || || ||| Sbjct 57525 TCGATGGTGTCGGAAGACTCAACCTCGAGAGTAATCGTCTTGCCGGTAAGCGTCTTAACG 57466 Query 64433 AAAATTTGCAT 64443 ||||| ||||| Sbjct 57465 AAAATCTGCAT 57455 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || |||||||||||||| | || ||| || | || || | |||||| || ||| | Sbjct 57873 TCCTTCTGAATGTTGTAATCAGAGAGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAAG 57814 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || ||||||||||| || || || || || || || || || |||||||| || Sbjct 57813 ATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTA 57754 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||||| | || ||||| | || | |||||||| ||||| || || ||| Sbjct 57753 TCAATCGTATCCGAAGACTCGACTTCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGACG 57694 Query 64433 AAAATTTGCAT 64443 ||||| ||||| Sbjct 57693 AAAATCTGCAT 57683 >seq81 Length=180685 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || | || |||||| | || ||||||||||||||||| | Sbjct 25151 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAG 25210 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || || ||||||||||| || || || || || || || || || || ||||| ||| Sbjct 25211 ATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACATTG 25270 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | | ||||| || | || | |||||||| || | || || ||| Sbjct 25271 TCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACG 25330 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 25331 AAGATCTGCAT 25341 >seq43 Length=285406 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | || |||||| | || || ||||||||||| ||| |||| Sbjct 263376 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATC 263435 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || |||||||||||||| || || || || || || || || || ||||| ||| || Sbjct 263436 AGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTGACATTGTCA 263495 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | || || || || || || | || | ||||||||| || | || || ||||| Sbjct 263496 ATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 263554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642564089520