Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq86 297 2e-75 >seq86 Length=170212 Score = 297 bits (328), Expect = 2e-75 Identities = 1072/1667 (64%), Gaps = 30/1667 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||| | |||||| || || || || ||||| || ||| | |||||| Sbjct 126214 AACTACCAATACTTCGGCTTCAAGACCCTCGAACGATCATACCTTCTTAAGCTCGATGGC 126273 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | || | ||||| || || || || | ||||| || || |||| || || || Sbjct 126274 CAGATTGCTGAGCGTCCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCTGGGGAGAC 126333 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||| | | || | | ||| || |||| ||||| | ||| || Sbjct 126334 GACGTTGAGCGGGTCATTGAGACTTACAACCTCATGTCCCTCAAGACCTTCACCCACGCT 126393 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | || ||||| |||||||| || || || ||| ||| | |||||||| |||||| | Sbjct 126394 TCTCCCACCCTCTTCAACGCCGGTACTCCCCAGCCCCAGCTCTCTTCGTGCTTCCTGGTC 126453 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| || || | ||| | ||||||| ||| || | || Sbjct 126454 GAC-ATGAAGGAAGACAGTATCGAGGGCATCTACGATACCCTCAAGACCTGCGCCATGAT 126512 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || || || || ||||| ||| ||||| | | ||||||| || ||||| Sbjct 126513 CTCTAAGATGGCTGGCGGTATCGGTCTCAACATCCACCGCATTCGTGCCACTGGCTCCTA 126572 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 |||| |||||||| ||||| |||||||| |||| || |||||||| ||||||||||| Sbjct 126573 CATCGCTGGTACCAACGGCACATCCAACGGTATCGTTCCCATGCTCCGTGTCTTCAACAA 126632 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || |||||||| ||||||||||| | | | ||| ||||||| |||| || Sbjct 126633 CACCGCCCGCTACGTTGACCAGGGTGGCAACAAGCGTCCTGGTGCTTTCGCCATCTACCT 126692 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 |||||| |||||||| || || | ||| | ||||| || ||||||||||| || || Sbjct 126693 CGAGCCTTGGCACGCCGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGTAAGGA 126752 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | | || | || |||||| || |||||| | || || ||||| ||||| || Sbjct 126753 AGAGGTGCGCGCTCGCGATCTCTTCCTTGCCCTCTGGATCCCCGATCTTTTCATGAAGCG 126812 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || ||| | ||| | |||| ||| | || || | || || || || || |||| Sbjct 126813 TGTTGAGCAGAACGGCCAGTGGACTCTCATGTGCCCTCACGAGTGCCCTGGCCTTGCCGA 126872 Query 94374 CGTTTGTGGATCGCG-TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCA 94432 ||||| || | || || |||| |||| | |||||| | | ||||||| Sbjct 126873 CGTTTACGG-TGACGAGTTCGAAGCTCTGTACGAAAAGTACGAAAAGGAAGGCAAGGGTC 126931 Query 94433 GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGG 94492 | ||| | | || |||||| ||| || ||| | || | ||| ||||||| Sbjct 126932 GCAAGACCGTCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCCCAGACTGAGACGG 126991 Query 94493 GTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCG 94552 | | |||| ||| | | |||||| | |||| |||| |||||| || |||| | Sbjct 126992 GCAACCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGTAACCAGAAGAACCTGG 127051 Query 94553 GGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGA 94612 | ||| ||||| || |||||||| |||||| ||||||| || ||||||| ||| Sbjct 127052 GTACCATCCGCAGCTCCAACCTGTGCACTGAGATTATCGAGTACTCTGCTCCGGATGAGG 127111 Query 94613 TTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGT 94672 |||| || || ||||| | ||| || ||| ||| | || | ||| |||| | Sbjct 127112 TTGCCGTTTGCAACCTTGCCTCTCTCGCCCTTTCCGCCTTTAT-CGA-----CTACGAG- 127164 Query 94673 CTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACC 94732 | ||| || | ||| | || |||| | || | | | ||| |||| Sbjct 127165 --AATGCCTCTTACGACTTCAAGAAGCTGCACGAGGTCACTCAAGTCGTCGTCCGCAACC 127222 Query 94733 TGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGA 94792 | |||| | | || |||| ||| ||||||||| |||||| | ||| ||| || Sbjct 127223 TCAACAAGATCATTGACATCAACCACTACCCCGTTAAGGAGGCCCACAACAGCAACATGC 127282 Query 94793 AGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTC 94852 || || ||||| || |||| || |||||| | || || || | || | || Sbjct 127283 GTCACCGTCCCATTGGTGTCGGTGTTCAGGGTCTTGCTGATGCTTTCTTGGCTCTCCGCA 127342 Query 94853 TGCCCTACGACTCTGTCGACGCGGCGGG---TTTGAATTTGAACATATTCGAAAGCATTT 94909 |||||| ||| ||| |||||||| | | || | | || ||||| | ||| | Sbjct 127343 TGCCCTTCGATTCT---GACGCGGCTAGCAAGCTCAACATCCAGATTTTCGAGACCATCT 127399 Query 94910 ATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAAT 94969 | ||| || | | || ||| | |||| ||| || || ||| Sbjct 127400 ACCACGCCGCTCTTACTGCCTCTTGCCAGCTCGCCA---AGGAGCAGGGCCCGTACGCCA 127456 Query 94970 CGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGC 95029 | | | || |||||| | ||||| || | || | |||| | ||| || | | Sbjct 127457 CCTACGAAGGCTCGCCCGTCTCCCAGGGAATCCTCCAATACGACATGTGGAACGTCACCC 127516 Query 95030 CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAA 95089 | | || | |||||| ||||| || || | | || ||||||| | Sbjct 127517 CTACCAACCTCTGGGACTGGACTGCTCTCAAGGCGGACATCAAGAAGTACGGTGTTCGCA 127576 Query 95090 ACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACG 95149 || ||||| | || || |||||||| || ||||| | ||||| ||||||||||||| Sbjct 127577 ACAGTCTGCTGCTTGCTCCTATGCCCACTGCTTCCACTTCTCAGATTCTTGGCAACAACG 127636 Query 95150 AGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCC 95209 ||| ||||| || | |||||| ||| | ||| | | || ||||||||||| || |||| Sbjct 127637 AGTGCTTCGAGCCTTACACCTCTAACATCTACCAACGACGTGTGCTCGCCGGCGAGTTCC 127696 Query 95210 CCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGG 95269 ||| ||||| || || |||| || | |||| | ||| ||| Sbjct 127697 AGGTCGTCAACCCCTGGCTTCTCAGGGATCTTGTGGAGATGGGCCTTTGGTCTGATGCCA 127756 Query 95270 TCAAGAACC----AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCG 95325 | ||||||| | |||| | | ||| || |||||||||||| || || Sbjct 127757 TGAAGAACCGCATCATTGCTGAGGG----CGGTTCTATCCAGAACATCCAAAGCATTCCC 127812 Query 95326 GAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 | ||||||||||| ||||| |||||||| |||||||| | ||||| Sbjct 127813 AATGACATCAAGGCTCTCTATAAGACCGTCTGGGAGATTTCTCAGCG 127859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720986113680