Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq18 116 4e-21 seq81 91.5 1e-13 seq46 84.2 2e-11 >seq18 Length=383124 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| | ||| | | | |||||||| |||||||||||||||||| Sbjct 57453 CCACCGCGTAGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTC 57394 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || || || || |||| | || |||||||| || || ||||| Sbjct 57393 AAAGTGCGGCCGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 57334 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| ||||| || | | || | ||||||| ||| |||||| Sbjct 57333 ATGCCCTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCACC 57274 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || ||||| || || || || ||||| Sbjct 57273 TCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||||||| | || || |||||||| || || || | | Sbjct 57646 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAA 57587 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 || |||||||| || || || || ||||| || ||||| ||| ||||| |||| | Sbjct 57586 AATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGGATCTTTTGCTTTACGTT 57527 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||||| ||||| ||||||| || | ||| || || || || || || || Sbjct 57526 GTCGATGGTGTCGGAAGACTCAACCTCGAGAGTAATCGTCTTGCCGGTAAGCGTCTTAAC 57467 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 57466 GAAAATCTGCAT 57455 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||||||||| || | || || ||||| | || ||||| | | | Sbjct 57874 CTCCTTCTGAATGTTGTAATCAGAGAGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAA 57815 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542 ||| |||||||| ||||| || || ||||| || ||||| ||| ||||| || | | Sbjct 57814 GATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTT 57755 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | || || | ||||| || || | ||| | ||| || || |||| || || || Sbjct 57754 ATCAATCGTATCCGAAGACTCGACTTCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGAC 57695 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 57694 GAAAATCTGCAT 57683 >seq81 Length=180685 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| || |||||||||||| | || || ||||| || || || |||| | Sbjct 25150 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 25209 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATT 138541 ||| || ||||| ||||| || || || || || ||||| ||| || || || | ||| Sbjct 25210 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACATT 25269 Query 138542 GTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 138601 | || | ||||||| | ||||||||||| | || | || || || || || || || | Sbjct 25270 G-TCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCA 25328 Query 138602 CAAAAATCTGCATG 138615 | || ||||||||| Sbjct 25329 CGAAGATCTGCATG 25342 >seq46 Length=277877 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 52665 CTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG 52724 || || ||||||||||| | |||| ||||||||||||| || || |||||||| Sbjct 256042 CTTCTTGGCATGAACGCCGACCTCATGAAGCAGTACATCGAGTTCGTCGCCGATCGTCTC 255983 Query 52725 TTGGTGCAGCTCGGGCAGCCA-AAGTACTTCAACGCTCGC--AATCCGTTTGAGTTTATG 52781 | || ||||| || | | ||| || || | ||| || || || || || ||| Sbjct 255982 CTTGTCGCCCTCGG-CAACGAGAAGATCTACA--GGTCGACTAACCCCTTCGACTTCATG 255926 Query 52782 AACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | |||||||| || | |||||||||||||| ||||||||||| || ||||| || Sbjct 255925 GAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTA 255870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260179225760