Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq86 167 2e-36 seq18 134 1e-26 seq81 114 1e-20 >seq86 Length=170212 Score = 167 bits (184), Expect = 2e-36 Identities = 1183/1876 (63%), Gaps = 58/1876 (3%) Strand=Plus/Minus Query 145719 GTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGGT 145778 ||| || |||||||| | | ||||| || | | || || || |||||||||||||| Sbjct 128052 GTCTACAGTGAACTGGATGGGCTGAGCAGCAGCCTGCGTACGGAGGTAGTACATGCCGGT 127993 Query 145779 CTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACAT---GACCGAGTACGTGGG 145835 |||||| ||| ||| | || || ||||| | || | || | ||||| Sbjct 127992 CTTGAGACCCATCTTCCAGCCGGCGAAATGCATGCTGGTAATCTTGCCCATG---GTGGG 127936 Query 145836 TTCGGCGACAAACAAATTTAGAG--ATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCG 145893 |||| || || ||| | ||| | ||| |||||||||||| | | | || ||||| Sbjct 127935 TTCG-CG-CATGTGAATGTTGAGGGACTGGGACTGATCAATGAAGGCACCACGATCGGCA 127878 Query 145894 GCCATGTCTATCATGC-ACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGAC 145952 ||||| | | ||| || ||| ||| ||||| |||| ||| ||||| |||||| Sbjct 127877 GCCATCTTGACAATGGTACGCTGAGA-AATCTCCCAGACGGTCTTATAGAGAGCCTTGAT 127819 Query 145953 GTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCG 146012 || | ||| || | |||||||| | ||| || || || | || ||| Sbjct 127818 GTCATTGGGAATGCTTTGGATGTTCTGGATAGAACCGCCCTCAGCAATGATGCGGTTCTT 127759 Query 146013 CAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCAC 146072 || | || ||| | || || || || || ||| || | ||||||| || Sbjct 127758 CATGGCATCAGACCAAAGGCCCATCTCCACAAGATCCCTGAGAAGCCAGGGGTTGACGAC 127699 Query 146073 CTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGA 146132 ||| |||||||||||||| || || | | || | ||| |||| | |||||||| | Sbjct 127698 CTGGAACTCGCCGGCGAGCACACGTCGTTGGTAGATGTTAGAGGTGTAAGGCTCGAAGCA 127639 Query 146133 CTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGA 146192 ||||||||| || || ||||| | || | ||| || ||||| || | ||||| | Sbjct 127638 CTCGTTGTTGCCAAGAATCTGAGAAGTGGAAGCAGTGGGCATAGGAGCAAGCAGCAGACT 127579 Query 146193 GTTTCTCACGCCGTGTCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATC 146252 ||| | || |||| | | || | || || | ||| | ||| | | | Sbjct 127578 GTTGCGAACACCGTACTTCTTGATGTCCGCCTTGAGAGCAGTCCAGTCCCAGA---GGTT 127522 Query 146253 CGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCGCGGAACAGGGGGCTATTCT- 146311 || || || || | ||||||| || | | || || | | ||| | | || Sbjct 127521 GGTAGGGGTGACGTTCCACATGTCGTATTGGAGGATTCCCTGGGAGACGGG-CGAGCCTT 127463 Query 146312 CGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAA 146371 |||| | | || || || | |||||| || | ||| || ||||| | Sbjct 127462 CGTAGGTGGCGTACGGGCCCTGCTCCTTGGCGAGCTGGCAAGAGGCAGTAAGAGCGGCGT 127403 Query 146372 AGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGA 146431 ||| |||||||| ||| | ||||| | || ||| | || ||| |||| | Sbjct 127402 GGTAGATGGTCTCGAAAATCTGGATGTTGAGCTTGCTAGCCGCGTCAGAATCGAAGGGCA 127343 Query 146432 TATCGAGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTT 146491 | |||| || || || || || |||||||| | |||||||||| ||| ||||| Sbjct 127342 TGCGGAGAGCCAAGAAAGCATCAGCAAGACCCTGAACACCGACACCAATGGGACGGTGAC 127283 Query 146492 TCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGA 146551 | |||| ||||| || || | ||| ||||||||| |||| ||||||||||||| Sbjct 127282 GCATGTTGCTGTTGTGGGCCTCCTTAACGGGGTAGTGGTTGATGTCAATGATCTTGTTGA 127223 Query 146552 GATTACGCACGACAATTTTCGTCAAACGATTCAGCAG---GACATAGTCAAATGTTTTAG 146608 | || || ||||| | || || | | |||| || | || | | | || Sbjct 127222 GGTTGCGGACGACGACTTGAGTGACCTCGTGCAGCTTCTTGAAGTCGTAAGAGGCATTC- 127164 Query 146609 TTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGT 146668 | || || || | | | ||||| |||||| | ||| || |||||| ||| | Sbjct 127163 TCGTA--GTCGATAAAGGCGGAAAGGGCGAGAGAGGCAAGGTTGCAAACGGCAACCTCAT 127106 Query 146669 CCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAt 146728 || | | |||| | |||||| | ||| |||||| || |||| | |||| | Sbjct 127105 CCGGAGCAGAGTACTCGATAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCCAGGT 127046 Query 146729 ttttttGGTTACTAAACTTG---TTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGG 146785 | || |||||||| |||| ||||||| ||||||||||||||| | || || | Sbjct 127045 TCTTCTGGTTACT---CTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCCCG 126989 Query 146786 TTTCGACATTGGTCTCGACGATGAATCTAAACAAATCT-CTGG-CCTTTACTTGTCTTTC 146843 | || | || ||||| |||| | | |||| || |||| |||| || ||||| | Sbjct 126988 TCTCAGTCTGGGCCTCGAGGATGG--CATACCAAAGCTTCTGGGCCTTGACG-GTCTTGC 126932 Query 146844 GTACAGTTTATTC-TTTTCGTATTTCTCGTACAATATTTCAAAACTAGA-ACCGTACTCG 146901 | | | ||| |||||||| || ||||||| ||| || || | |||||| || Sbjct 126931 GACCCTTGCCTTCCTTTTCGTACTTTTCGTACAGAGCTTCGAA-CTCGTCACCGTAAACG 126873 Query 146902 TCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACG 146961 ||| ||||| || ||| | || || | || | ||| | |||| || || Sbjct 126872 TCGGCAAGGCCAGGGCACTCGTGAGGGCACATGAGAGTCCACTGGCCGTTCTGCTCAACA 126813 Query 146962 CGTTCCATAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGCCTTGGCGTCC 147021 || | ||| || | |||||| ||||| ||| | || | | |||||||| | || Sbjct 126812 CGCTTCATGAAAAGATCGGGGATCCAGAGGGCAAGGAAGAGATCGCGAGCGCGCACCTCT 126753 Query 147022 TCGGAGCCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCC 147081 || || ||| | | || |||| ||| | | || | ||||||||||| Sbjct 126752 TCCTTACCGTGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCG 126693 Query 147082 ACGTATGCGGCGAGTGCGCCTTTTCGCTTA---CCGCCCTGATCGACGTGGCGCACCATG 147138 | ||| ||||| || || ||||| || ||||| || |||| ||| | || Sbjct 126692 AGGTAGATGGCGAAAGCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAGCGGGCGGTG 126633 Query 147139 TTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTTTG---TGGTGCC---GTTG 147192 || |||||||| || | ||||| |||| ||| |||| | |||| || | || Sbjct 126632 TTGTTGAAGACACGGAGCATGGGAACGATACCGTTGGATGTGCCGTTGGTACCAGCGATG 126573 Query 147193 TATTGAGCGC-TGAC------GCTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGA 147245 || |||| || | || || | | | || |||| ||| || ||| || || Sbjct 126572 TAG-GAGCCAGTGGCACGAATGCGGTGGATGTTGAGACCGATACCGCCAGCCATCTTAGA 126514 Query 147246 AATCAAAGCGGAC-TCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATGC 147304 |||| ||| | || || | ||| | ||||||||| ||||| ||||||||||| ||| Sbjct 126513 GATCATGGCGCAGGTCTTG-AGGGTATCGTAGATGCCCTCGATACTGTCTTCCTTCATGT 126455 Query 147305 ATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGC 147364 |||||| |||||| | | ||||| | || || || || || ||||| Sbjct 126454 CGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAGTACCGGCGTTGAAGAGGGTGGGAG 126395 Query 147365 TGGCGTGCGTGAACGTGCCCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGT 147424 ||||| ||||| || || ||| | | || || |||||| | | | ||||| Sbjct 126394 AAGCGTGGGTGAAGGTCTTGAGGGACATGAGGTTGTAAGTCTCAATGACCCGCTCAACGT 126335 Query 147425 CATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCA 147484 | || || || | | || || ||||||| |||||||||||| || || |||||| Sbjct 126334 CGTCTCCCCAGATACCGACAGCAACACGCATGATCATGTGCTGGGGACGCTCAGCAATCT 126275 Query 147485 CGTCATTGACTTTTAATAGATATCCATTGGTC-AGAGTTTTGAAACCAAAGTACTTGTAG 147543 | ||| || || | || ||| || | || || || ||||| || ||||| | |||| Sbjct 126274 GGCCATCGAGCTTAAGAAGGTAT-GATCGTTCGAGGGTCTTGAAGCCGAAGTATTGGTAG 126216 Query 147544 TCGTAGTCCCTGTTGT 147559 | | |||| | || || Sbjct 126215 TTGAAGTCACGGTCGT 126200 >seq18 Length=383124 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||| || ||||| ||||| ||| Sbjct 57681 CCACCACGAAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAG 57622 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| ||||||||| | || | ||||||||||| || || Sbjct 57621 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGG 57562 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| | ||||| ||| |||||| | | ||| || Sbjct 57561 ATACCCTCCTTGTCCTGGATCTTTTGCTTTACGTTGT-CGATGGTGTCGGAAGACTCAAC 57503 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| |||||||| || || || || ||||||||||| Sbjct 57502 CTCGAGAGTAATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||||| || | || | ||| | |||||||| || ||||| ||||| |||| | Sbjct 57453 CCACCGCGTAGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTC 57394 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| | || | ||||||||||||||||| Sbjct 57393 AAAGTGCGGCCGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 57334 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || ||||||| |||| |||| ||||| | || || Sbjct 57333 ATGCCCTCCTTGTCTTGGATCTTTTGCTTGACGTTG-TCGATAGTGTCGGACGATTCCAC 57275 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || |||||||| ||||| || || || || ||||| Sbjct 57274 CTCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | || ||| || ||||| |||||||| | || || | Sbjct 57897 CGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTCCGGCCA 57838 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| || ||||| |||||| |||||||| || || || || ||||||||| Sbjct 57837 TCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTG 57778 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | | || | || |||| | ||||||||| | || | | Sbjct 57777 TCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGACTTCCAGCGTAATC 57718 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||| || || || ||||||||||| Sbjct 57717 GTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Score = 100 bits (110), Expect = 3e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| | ||||| ||| || | ||| || || Sbjct 57195 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCG 57136 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | ||||| |||||||| ||||| || ||||||||||||||| || || |||||| Sbjct 57135 GCAAAAATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTTTGCTTG 57076 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | | || | ||| |||| |||||| |||| ||| | || |||||||||| Sbjct 57075 ACATTGTCAATGGTATCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCA 57021 >seq81 Length=180685 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| ||| | ||||| ||| || ||||| || || ||| | Sbjct 25150 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 25209 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 ||||| |||||||| || || || ||||||||||||||| ||| |||||||||| | Sbjct 25210 GATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTGACATT 25269 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 |||| |||||| || ||| || || | ||| | || ||||| || || || || || Sbjct 25270 GTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCAC 25329 Query 127102 AAAAATCTGCATG 127114 || ||||||||| Sbjct 25330 GAAGATCTGCATG 25342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498672133920