Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq18 100 3e-16 >seq18 Length=383124 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 45150 TCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTAT 45209 ||||| || || || || ||| || ||| | ||| || | || ||||| ||| | Sbjct 57645 TCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAA 57586 Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 || | || ||||| || || || || || || || || || || ||||| || | || | Sbjct 57585 ATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGGATCTTTTGCTTTA-CGTT 57527 Query 45270 -TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 || | ||||||||||||||| || |||||||||| ||| |||||||| || || || || Sbjct 57526 GTCGATGGTGTCGGAAGACTCAACCTCGAGAGTAATCGTCTTGCCGGTAAGCGTCTTAAC 57467 Query 45329 AAAAATTTGCAT 45340 ||||| ||||| Sbjct 57466 GAAAATCTGCAT 57455 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | || ||| | || || || ||||| || || || ||||| | Sbjct 57909 CCGCCACGGAGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAG 57850 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| ||||| || || || || | |||| || |||||||| ||||| Sbjct 57849 AGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 57790 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || || || ||||| || | || | || | || || ||||||||||| Sbjct 57789 ATACCCTCCTTGTCCTGGATCTTTTGCTTCA-CGTTATCAATCGTATCCGAAGACTCGAC 57731 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || |||| ||| ||||| || | || || || ||||| ||||| Sbjct 57730 TTCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001177285680