Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq86 242 5e-59 seq46 131 2e-25 >seq86 Length=170212 Score = 242 bits (268), Expect = 5e-59 Identities = 1125/1752 (64%), Gaps = 59/1752 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 |||||||||||||| || |||||||| ||| ||||||| | | |||||| || Sbjct 128012 CGGAGGTAGTACATGCCGGTCTTGAGACCCATCTTCCAGCCGGCGAAATGCATGCTGGTA 127953 Query 115618 AACTTGGAGAGTGTTGGACTTTC-CATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676 | |||| | || ||| | | |||| | ||| | ||||| ||||| ||||| Sbjct 127952 ATCTTGCCCA-TGGTGGGTTCGCGCATGTGAATGTTGAGGGACTGGGACTGATCAATGAA 127894 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAGTT 115734 | || ||||| || ||||| | | || || | | || | ||||| || || Sbjct 127893 GGCACCACGATCGGCAGCCATCTTGA-CA-ATGGTACGCTGAGAAATCTCCCAGACGGTC 127836 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCAC--GATATTTTGGATAGAGCCACCTG 115792 | ||||| ||| || |||| ||||| || | ||| || |||||||| || || Sbjct 127835 TTATAGAGAGCCTTGATGTCAT-TGGGA-ATGCTTTGGATGTTCTGGATAGAACCGCCCT 127778 Query 115793 CCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCA 115852 | | ||| | | |||||| | | ||||| || || |||| | |||||| | Sbjct 127777 CAGCAATGATGCGGTTCTTCATGGCATCAGACCAAAGGCCCATCTCCACAAGATCCCTGA 127718 Query 115853 ----CGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATG 115908 | ||| | ||||| || ||||| || ||||| |||| | |||||| Sbjct 127717 GAAGCCAGGGG----TTGACGACCTGGAACTCGCCGGCGAGCACACGTCGTTGGTAGATG 127662 Query 115909 TTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTG 115968 || | ||||| ||||| |||||||| ||||| || | || || | ||||| || ||| Sbjct 127661 TTAGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGAGAAGTGGAAGCAGTG 127602 Query 115969 GGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGG 116028 ||||| || || | || || |||||||| | ||| | | | ||| ||||||| Sbjct 127601 GGCATAGGAGCAAGCAGCAGACTGTTGCGAACACCGTACTTCTTGATGTCCGCCTTGAGA 127542 Query 116029 GCGTCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTCCCACATATCAAACTGGAGGATA 116085 || |||||| || || || || | | |||||| || | |||||||| Sbjct 127541 GCAGTCCAGTCCCAG---AGGTTGGTAGGGGTGACGTTCCACATGTCGTATTGGAGGATT 127485 Query 116086 CCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG 116145 || ||||| | ||||| || || | || | || ||||||| ||| || | | | Sbjct 127484 CCCTGGGAGACGGGCGAGCCTTCGTAGGTGGCGTACGGGCCCTGCTCCTTGGCGAGCTGG 127425 Query 116146 GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA--TTGCCT 116203 | || || || ||||| || || ||||| ||||| | || | |||| Sbjct 127424 CAAGAGGCAGTAAGAGCGGCGTGGTAGATGGTCTCGAAAATCTGGATGTTGAGCTTGC-- 127367 Query 116204 TGGCCTCGTCGGAATCAAACGCGAGACGGC-ACAAAATAAATACATCCGCGAGACCTTGG 116262 | ||| |||| ||||| || | | ||| | || ||| |||| || ||||| || Sbjct 127366 TAGCCGCGTCAGAATCGAAGGGCATGCGGAGAGCCAAGAAAG-CATCAGCAAGACCCTGA 127308 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCC---ACGGGA 116319 ||||||| ||||| || || || | ||| || || | | | || |||| ||||| Sbjct 127307 ACACCGACACCAATGGGACGGTGACGCATGTTG--CTGTTGTG-GGCCTCCTTAACGGGG 127251 Query 116320 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 116379 || || | || || | | | || || || | ||| || | |||| || || Sbjct 127250 TAGTGGTTGATGTCAATGATCTTGTTGAGGTTGCGGACGACGACTTGAGTGACCTCGTGC 127191 Query 116380 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 116439 ||||| | | | || || | | |||| | | || | | | |||||||| || Sbjct 127190 AGCTTCTTGAAGTCGTAAGAGGCATTCTCGTAGTCGATAAAGGCGGAAAGGGCGAGAGAG 127131 Query 116440 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 116499 || || || || || | ||||||| | ||| |||||| ||||| || || |||| Sbjct 127130 GCAAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTCAGTGCACAGG 127071 Query 116500 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 116559 || || || ||||| |||| |||||| || || ||| ||| || ||||||||| Sbjct 127070 TTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGGCATCCTTG 127011 Query 116560 TAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATC 116618 |||||||| | || | |||||||| || |||| || ||| || || | ||| | | || Sbjct 127010 TAGAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATACCAAAGCTTC 126951 Query 116619 GGCGGCTGGCACAGTG--GCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCC 116676 | | || | || || ||| || ||| |||| ||||||||| ||| || || Sbjct 126950 TGGGCCTTG-ACGGTCTTGCGACC-CTTGCCT-TCCTTTTCGTACTTTTCGTACAGAGCT 126894 Query 116677 TCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGAC 116736 || ||||| ||||| | | || | || || || || | || || | ||||| | Sbjct 126893 TCGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCACATGAGAGTC 126834 Query 116737 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 116796 || || || || |||||| ||||||||||| || || ||||||||||| || |||| Sbjct 126833 CACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCAAGGAAG 126774 Query 116797 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 116856 ||||| ||| ||| | ||||| | || || || || | || | || || | | Sbjct 126773 AGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAGGAACTCGAAG 126714 Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCA 116910 | ||| |||||||| || || ||||| | |||| | || | |||| ||| Sbjct 126713 ACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGACGCTTG---TTGCCA 126657 Query 116911 GCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCA 116970 |||||| || || | || || ||| || || || ||||| |||| |||||| | Sbjct 126656 CCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTTG 126597 Query 116971 GATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCA 117028 ||| ||| || || || ||| || ||| | |||| | | |||||||| | Sbjct 126596 GATGTGCCGTTGGTACCAGCGATGTAGGAGCC--AGTGGCACGAATGCGGTGGATGTTGA 126539 Query 117029 TACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCC 117088 ||| ||||| || ||| ||| ||||| ||||| | |||| | ||||||| | Sbjct 126538 GACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTAGATGC 126479 Query 117089 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 117148 | ||||| ||| |||| | ||| |||||||| || | || ||| || | Sbjct 126478 CCTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAG 126419 Query 117149 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTT--GGGACATCTTATC 117206 |||| |||||||||||||| || | |||||| |||| | ||| ||||||| | Sbjct 126418 TACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAAGGT--CTTGAGGGACATGAGGTT 126361 Query 117207 GTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAA 117266 ||| ||||| | ||| || ||| || || ||||||| | || ||||| | Sbjct 126360 GTAAGTCTCAATGACCCGCTCAACGTCGTCTCCCCAGATACCGACAGCAACACGCATGAT 126301 Query 117267 CATGTATTGGGG 117278 ||||| ||||| Sbjct 126300 CATGTGCTGGGG 126289 >seq46 Length=277877 Score = 131 bits (144), Expect = 2e-25 Identities = 520/810 (64%), Gaps = 9/810 (1%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || ||||||||||||||||| ||||| ||| |||| || |||||||| Sbjct 255869 GTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCAT 255928 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT-TGGCACCCCAATCTGTTTGAGGAGAC 127349 || || || ||||| | || | | || | | | || | | ||||||| Sbjct 255929 GAAGTCGAAGGGGTTAGTCGACCTGTAGATCTTCTCGTTGCCGAGGGCGACA-AGGAGAC 255987 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||| | |||| |||| ||||||| ||| || | |||||| || | ||| | Sbjct 255988 GATCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGAAGGGCGC 256047 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | ||||| || || || |||| ||| |||||| || || || | ||| | | Sbjct 256048 AAGGGAGGGCCTCAGTGAGGAACTCCTGCTCAATTCTGACGGCATCGACAATGATTTCCT 256107 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTCCACAGCAAACTCT 127528 | || | | | || | ||| | | || |||||| ||||| || Sbjct 256108 GGATCAGCTGCTTGCTGGGGCGGTTGT-TGAGGTGAGAGAAGAGAAGGCAGGCAAAGTCG 256166 Query 127529 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 127588 |||||||||||| |||||||||||||| || || || ||| || || ||||||||| Sbjct 256167 GTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAAAAGGTAAGGCCAGGCATGAGA 256226 Query 127589 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 || |||||||| | |||||| || | || | || ||||||||| ||||| || Sbjct 256227 CCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATACCCTCGACG 256286 Query 127649 CACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATC 127708 || || || | ||||||| |||||||| | | ||| || ||| | Sbjct 256287 GCAGCAAAGGCGACGAGACGCTGGGCAAAGGTGGAGCTCTTGTCGGTAATCCAGCGAAGA 256346 Query 127709 GCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTC 127768 ||||| | |||||||| ||| || |||| ||| | || || | ||||| | || Sbjct 256347 GCCCAGTCAGCCTTTTTGCGGATGCAAGGGATGGTGTCAATAGCGTTGAAGAGGTAGGTC 256406 Query 127769 TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACC 127828 | | || || || |||||||| | || ||||| || || || ||| ||| | Sbjct 256407 CTCTGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATG 256466 Query 127829 AT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATC 127887 | | ||| || | ||| | ||||||| |||| || ||| ||||| || || | Sbjct 256467 TTCTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATCTGGACTTCGCC 256525 Query 127888 GGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAG 127947 || | || |||||| ||||| |||||||| |||| || || || || Sbjct 256526 ACTGAAGCGCTCGACGAGGTTCTCATTGACAATACCATCGGAGGCAGCGAAGAAAGCGAG 256585 Query 127948 GATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCGAGATC 128004 || | ||||| || || | ||||||| | | |||||||||| || || Sbjct 256586 AATGTGGGAGATGAAGAACTTCTCGTCGTCGTTCAACCTGTTGTTCCAGTCGTGAAGGTC 256645 Query 128005 CTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||| |||||||| | |||||| || ||||| Sbjct 256646 CTTGGAGAGATCAATCTCCTCGGCGGTCCA 256675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504454555280