Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq86 172 9e-38 seq46 149 1e-30 >seq86 Length=170212 Score = 172 bits (190), Expect = 9e-38 Identities = 458/688 (67%), Gaps = 14/688 (2%) Strand=Plus/Minus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897 || ||| || |||||||| |||| | | |||| ||||| | | || |||||||||| Sbjct 128055 CTGGTCTACAGTGAACTGGATGGGCTGAGCAGCAG-CCTGCGTACGGAGGTAGTACATGC 127997 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 ||||||| || ||| ||| ||| ||| | |||||| | | |||| || | ||| Sbjct 127996 CGGTCTTGAGACCCATCTTCCAGCCGGCGAAATGCATGCTGGTAATCTTGCCCATGGTGG 127937 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016 | ||| |||||||||||| || |||||| || || ||||| ||| || ||||| || Sbjct 127936 GTTCGCGCATGTGAATGTTGAGGGACTGGGACTGATCAATGAA-GGCACCACGATCGGCA 127878 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076 ||||| |||| |||||| ||| ||||||||||| || ||||| | | | || || Sbjct 127877 GCCATCTTGACAATGGTACGCTGAGAAATCTCCCAGACGGTCTTATAGAGAGCCTTGATG 127818 Query 204077 TGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 | | || | ||| | || || ||| || ||| || || || | | || | Sbjct 127817 TCAT-TGGGAATGCTTTGGATGTTCTGGATAGAACCGCCCTCAGCAATGATGCGGTTCTT 127759 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | | || ||| | ||||| | | || |||| | || |||||||| || Sbjct 127758 CATGGCATCAGACCAAAGGCCCATCTCCACAAGATCCCTGAGAAGCCAGGGGTTGACGAC 127699 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || |||| ||||| | ||| | | | ||| |||| | || ||||| Sbjct 127698 CTGGAACTCGCCGGCGAGCACACGTCGTTGGTAGATGTTAGAGGTGTAAGGCTCGAAGCA 127639 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | |||||||| ||| || |||||||| ||||| || ||||| Sbjct 127638 CTCGTTGTTGCCAAGAATCTGAGAAGTGGAAGCAGTGGGCATAGGAGCAAGCAGCAGACT 127579 Query 204316 GTTGCGCACACCGTA-TTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---GTGCATCG 204371 |||||| |||||||| || ||| | || ||| |||| |||||||| | | | | Sbjct 127578 GTTGCGAACACCGTACTTCTTGATGTCCGC-CTTGAGAGCAGTCCAGTCCCAGAGGTTGG 127520 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431 | || | ||| |||||||||| | || | ||| || || ||| || ||| | Sbjct 127519 ---TAGGGGTGACGTTCCACATGTCGTATTGGAGGATTCCCTGGGAGACGGGCGAGCCTT 127463 Query 204432 TGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGAT 204491 ||| || | || || | ||| | || |||| ||| ||||| | | ||| | Sbjct 127462 CGTAGGTGGCGTACGGGCCCTGCTCCTTGGCGAGCTGGCAAGAGGCAGTAAGAGCGGCGT 127403 Query 204492 AGTACATGGTCTCAAAGATCTGAACGTT 204519 ||| |||||||| || ||||| | ||| Sbjct 127402 GGTAGATGGTCTCGAAAATCTGGATGTT 127375 >seq46 Length=277877 Score = 149 bits (164), Expect = 1e-30 Identities = 379/569 (67%), Gaps = 6/569 (1%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || || ||||| ||||||||| ||| || ||||| || || ||||||| ||||||||| Sbjct 256146 AAGAGAAGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAA 256205 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | | ||||| ||||||| || ||| |||||||| || |||| || ||||||||| Sbjct 256206 AAGGTAAGGCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCG 256265 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || || ||||| ||||| ||||| ||||| || ||||| | || |||| | || | | Sbjct 256266 CTGAAGAAGATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAGGTGGAGCTC 256325 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGC-GATGCACGGCATGCGCTC 160152 |||| |||| | ||||| |||||||| ||||| |||||| || ||| || Sbjct 256326 TTGTCGGTAATCCAGCGAAGAGCCCAGTCAGCCTT-TTTGCGGATGCAAGGGATGGTGTC 256384 Query 160153 GACGGCGTTAAACA-ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCT 160211 | ||||| || | | ||||| || |||||||| ||| | || || Sbjct 256385 AATAGCGTTGAAGAGGTAGGTCCT-CTGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGA 256443 Query 160212 TCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCG 160271 ||||| | || | ||| | || || || ||||| || |||||| | | Sbjct 256444 GGGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAG 256503 Query 160272 CCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGT 160331 |||| | ||| || || |||| | | | || || |||| || | || | Sbjct 256504 CCTCGGGGATCTGGACTTCGCCACTGAAGCGCTCGACGAGGTTCTCATTGACAATACCAT 256563 Query 160332 CGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTC 160391 ||| ||| || |||||||| | | ||| |||||||| ||||||| | ||| | | Sbjct 256564 CGGAGGCAGCGAAGAAAGCGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCGTTCAACC 256623 Query 160392 TCTTTTCCCAGT-GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCA 160450 | || | ||||| ||| | ||| | || | ||||| ||| || ||| |||| || | Sbjct 256624 TGTTGTTCCAGTCGTG-AAGGTCCTTGGAGAGATCAATCTCCTCGGCGGTCCAGAAGGAA 256682 Query 160451 GCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 |||| || | |||||||| |||||| Sbjct 256683 GCCTCGGCCTTCTTGTACATTTGCCAGAT 256711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151641680480