Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25]
358 sequences; 40,416,174 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq86 172 9e-38
seq46 149 1e-30
>seq86
Length=170212
Score = 172 bits (190), Expect = 9e-38
Identities = 458/688 (67%), Gaps = 14/688 (2%)
Strand=Plus/Minus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTT-CTCAGATAGTACATGC 203897
|| ||| || |||||||| |||| | | |||| ||||| | | || ||||||||||
Sbjct 128055 CTGGTCTACAGTGAACTGGATGGGCTGAGCAGCAG-CCTGCGTACGGAGGTAGTACATGC 127997
Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957
||||||| || ||| ||| ||| ||| | |||||| | | |||| || | |||
Sbjct 127996 CGGTCTTGAGACCCATCTTCCAGCCGGCGAAATGCATGCTGGTAATCTTGCCCATGGTGG 127937
Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCG 204016
| ||| |||||||||||| || |||||| || || ||||| ||| || ||||| ||
Sbjct 127936 GTTCGCGCATGTGAATGTTGAGGGACTGGGACTGATCAATGAA-GGCACCACGATCGGCA 127878
Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076
||||| |||| |||||| ||| ||||||||||| || ||||| | | | || ||
Sbjct 127877 GCCATCTTGACAATGGTACGCTGAGAAATCTCCCAGACGGTCTTATAGAGAGCCTTGATG 127818
Query 204077 TGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135
| | || | ||| | || || ||| || ||| || || || | | || |
Sbjct 127817 TCAT-TGGGAATGCTTTGGATGTTCTGGATAGAACCGCCCTCAGCAATGATGCGGTTCTT 127759
Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195
| | | || ||| | ||||| | | || |||| | || |||||||| ||
Sbjct 127758 CATGGCATCAGACCAAAGGCCCATCTCCACAAGATCCCTGAGAAGCCAGGGGTTGACGAC 127699
Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255
||| || || |||| ||||| | ||| | | | ||| |||| | || |||||
Sbjct 127698 CTGGAACTCGCCGGCGAGCACACGTCGTTGGTAGATGTTAGAGGTGTAAGGCTCGAAGCA 127639
Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315
|||||||||||| | |||||||| ||| || |||||||| ||||| || |||||
Sbjct 127638 CTCGTTGTTGCCAAGAATCTGAGAAGTGGAAGCAGTGGGCATAGGAGCAAGCAGCAGACT 127579
Query 204316 GTTGCGCACACCGTA-TTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---GTGCATCG 204371
|||||| |||||||| || ||| | || ||| |||| |||||||| | | | |
Sbjct 127578 GTTGCGAACACCGTACTTCTTGATGTCCGC-CTTGAGAGCAGTCCAGTCCCAGAGGTTGG 127520
Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCT 204431
| || | ||| |||||||||| | || | ||| || || ||| || ||| |
Sbjct 127519 ---TAGGGGTGACGTTCCACATGTCGTATTGGAGGATTCCCTGGGAGACGGGCGAGCCTT 127463
Query 204432 TGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGAT 204491
||| || | || || | ||| | || |||| ||| ||||| | | ||| |
Sbjct 127462 CGTAGGTGGCGTACGGGCCCTGCTCCTTGGCGAGCTGGCAAGAGGCAGTAAGAGCGGCGT 127403
Query 204492 AGTACATGGTCTCAAAGATCTGAACGTT 204519
||| |||||||| || ||||| | |||
Sbjct 127402 GGTAGATGGTCTCGAAAATCTGGATGTT 127375
>seq46
Length=277877
Score = 149 bits (164), Expect = 1e-30
Identities = 379/569 (67%), Gaps = 6/569 (1%)
Strand=Plus/Plus
Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973
|| || ||||| ||||||||| ||| || ||||| || || ||||||| |||||||||
Sbjct 256146 AAGAGAAGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAA 256205
Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033
| | | ||||| ||||||| || ||| |||||||| || |||| || |||||||||
Sbjct 256206 AAGGTAAGGCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCG 256265
Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093
|| || ||||| ||||| ||||| ||||| || ||||| | || |||| | || | |
Sbjct 256266 CTGAAGAAGATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAGGTGGAGCTC 256325
Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGC-GATGCACGGCATGCGCTC 160152
|||| |||| | ||||| |||||||| ||||| |||||| || ||| ||
Sbjct 256326 TTGTCGGTAATCCAGCGAAGAGCCCAGTCAGCCTT-TTTGCGGATGCAAGGGATGGTGTC 256384
Query 160153 GACGGCGTTAAACA-ATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCT 160211
| ||||| || | | ||||| || |||||||| ||| | || ||
Sbjct 256385 AATAGCGTTGAAGAGGTAGGTCCT-CTGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGA 256443
Query 160212 TCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCG 160271
||||| | || | ||| | || || || ||||| || |||||| | |
Sbjct 256444 GGGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAG 256503
Query 160272 CCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGT 160331
|||| | ||| || || |||| | | | || || |||| || | || |
Sbjct 256504 CCTCGGGGATCTGGACTTCGCCACTGAAGCGCTCGACGAGGTTCTCATTGACAATACCAT 256563
Query 160332 CGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTC 160391
||| ||| || |||||||| | | ||| |||||||| ||||||| | ||| | |
Sbjct 256564 CGGAGGCAGCGAAGAAAGCGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCGTTCAACC 256623
Query 160392 TCTTTTCCCAGT-GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCA 160450
| || | ||||| ||| | ||| | || | ||||| ||| || ||| |||| || |
Sbjct 256624 TGTTGTTCCAGTCGTG-AAGGTCCTTGGAGAGATCAATCTCCTCGGCGGTCCAGAAGGAA 256682
Query 160451 GCCTGAGCAGTTTTGTACATGGCCCAGAT 160479
|||| || | |||||||| ||||||
Sbjct 256683 GCCTCGGCCTTCTTGTACATTTGCCAGAT 256711
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795151641680480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |