Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq18 134 3e-26 seq81 120 7e-22 seq43 89.7 1e-12 >seq18 Length=383124 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || || |||||||| || | ||||||||| |||||| | || ||| Sbjct 57438 AGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCT 57379 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| |||||||| |||||||||||||| || ||| ||| || || || Sbjct 57378 TCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCT 57319 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||||||||| ||| |||| ||||| | | ||| || || | ||||| ||| Sbjct 57318 TGGATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCACCTCAAGGGTGATGGTC 57259 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || ||||| Sbjct 57258 TTGCCGGTAAGAGTCTTGACGAAGATTTG 57230 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| ||||| |||||| || | |||||| |||| | ||| Sbjct 57903 CGGAGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTC 57844 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||| || || ||||| |||||||||||||| || || || Sbjct 57843 CGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATACCC 57784 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||||||||||||| || | || || | | || || |||| | Sbjct 57783 TCCTTGTCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGACTTCCAGC 57724 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| | || || || ||||| || Sbjct 57723 GTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTG 57686 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| || |||||||| |||| ||||||||| | | || | ||||| Sbjct 57210 AGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 57151 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||| || || | ||||||||||| || ||| || || ||| Sbjct 57150 TCCAACTGCTTGCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 57091 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||||||||| || || | ||| || | | || || || | ||||| ||| Sbjct 57090 TGAATCTTTTGCTTGACATTGTCAATGGTATCCGACGACTCGACCTCGAGGGTGATGGTC 57031 Query 199598 TTACCCGT 199605 || || || Sbjct 57030 TTGCCGGT 57023 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || |||||| || | ||||||||| | | || Sbjct 57675 CGAAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTG 57616 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||||||||| ||||| |||||||||||||| || || || || Sbjct 57615 CGACCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGGATACCC 57556 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||||||||| ||| |||| |||||| | | || || || | Sbjct 57555 TCCTTGTCCTGGATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGA 57496 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || || || ||||| || Sbjct 57495 GTAATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTG 57458 >seq81 Length=180685 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| || |||||| |||| ||||||||| | | || | ||||| Sbjct 25130 AGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 25189 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| || ||||||||||| || || || || ||| Sbjct 25190 TCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 25249 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| || |||| |||||| | | || || || | ||||| ||| Sbjct 25250 TGGATCTTCTGCTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTC 25309 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || ||||| || || || Sbjct 25310 TTGCCCGTGAGGGTCTTCACGAAGATCTG 25338 >seq43 Length=285406 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 199432 AGTCGACT--CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTT 199489 |||| ||| |||| |||| ||||||||| | | || | ||||| || |||||||| Sbjct 263364 AGTCCACTGACCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTG 263423 Query 199490 CCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC 199549 || || || || || ||||||||||| || || || || ||||||||||| ||| Sbjct 263424 CCAGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGC 263483 Query 199550 TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGA 199609 || || || | ||||| | | || || || | |||||| ||||| |||||||| Sbjct 263484 TTGACATTGTCAATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGTGAGG 263543 Query 199610 GTTTTCACAAA 199620 || || || || Sbjct 263544 GTCTTGACGAA 263554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178916192433986