Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq46 262 4e-65 seq18 134 1e-26 seq81 125 7e-24 seq43 118 1e-21 >seq46 Length=277877 Score = 262 bits (290), Expect = 4e-65 Identities = 578/859 (67%), Gaps = 17/859 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || ||||| || ||||| || || || || || || | Sbjct 255851 CATGACACCAGCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACC 255910 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707 | |||||| | ||| || || |||||||| | | ||||| ||| | |||| Sbjct 255911 GAGAGAAATGTTCTCCATGAAGTCGAAGGGGTTAGTCGACCTGTAGATCTTCTCGTTGCC 255970 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767 || || |||| || || | ||||| |||||||||||||| ||| |||| ||| Sbjct 255971 GA---GGGCGACAAGGAGACGATCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGC 256027 Query 132768 ATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | || || || |||| || || || || ||||| || ||||| || || Sbjct 256028 GTTCATGCCAAGAAGGGCGCAAGGG-AGGGCCTCAGTGAGGAACTCCTGCTCAATTCTGA 256086 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 | || ||| | ||||||| | || | ||| || || | | || || Sbjct 256087 CGGCATCGACAATGATTTCCTGGATCAGCTGCTTGCTGGGGCGGTTGTTGAGGTGAGAGA 256146 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 | | | ||| ||||||||| || | ||||| || | ||| ||||| |||||| | Sbjct 256147 AGAGAAGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAAA 256206 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | || | ||| |||||||| ||||| || |||||||| || |||| ||||||| || Sbjct 256207 AGGTAAGGCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGC 256266 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 ||||||| ||||||||||| || || || || || |||| | | || |||| | Sbjct 256267 TGAAGAAGATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAGGTGGAGCTCT 256326 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGA 133126 || || |||||||| || ||||| || ||||||| || ||| || || || || | Sbjct 256327 TGTCGGTAATCCAGCGAAGAGCCCAGTCAGCCTTTTTGCGGATGCAAGGGATGGTGTCAA 256386 Query 133127 TGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC---ACGTAGGTGTCGATGAGGG 133183 | ||||| | | | | || | ||| | |||| | | ||| |||||||||||| Sbjct 256387 TAGCGTTGA--AGAGGTAGGTCCTC-TGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGA 256443 Query 133184 TCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCG 133243 || || | || ||||| | ||||||||| ||| || || ||||| ||||| || | Sbjct 256444 GGGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAG 256503 Query 133244 CCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 ||||| | ||| ||||| | ||| |||||||| || || || ||||| || || | Sbjct 256504 CCTCGGGGATCTGGACTTCGCCACTGAAGCGCTCGACGAGGTTCTCATTGACAATACCAT 256563 Query 133304 CGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA-- 133361 || ||| ||||| || || || | ||| |||||| ||||| ||||||||| Sbjct 256564 CGGAGGCAGCGAAGAAAGCGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCGTTCAACC 256623 Query 133362 -GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420 | | ||||||| | ||||||||| || || | ||||||| ||||||| || || | Sbjct 256624 TGTTGTTCCAGTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCGGCGGTCCAGAAGGAAG 256683 Query 133421 CCTCGGCTTTTTTGTACAT 133439 ||||||| || |||||||| Sbjct 256684 CCTCGGCCTTCTTGTACAT 256702 >seq18 Length=383124 Score = 134 bits (148), Expect = 1e-26 Identities = 165/219 (75%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || || || |||| || ||| | || Sbjct 57455 ATGCAGATTTTCGTTAAGACGCTTACCGGCAAGACGATTACTCTCGAGGTTGAGTCTTCC 57514 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| ||||| |||| |||| ||||| ||||| || || | || | Sbjct 57515 GACACCATCGACAACG--TAAAGCAAAAGATCCAGGACAAGGAGGGTATCCCACCTGATC 57572 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||||| ||| || || ||||| || || | ||||||||| |||||||| Sbjct 57573 AGCAGCGTCTCATTTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCCGACTACA 57632 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGT 38459 |||| || ||||| ||| || ||||| |||||||| ||| Sbjct 57633 ACATTCAGAAGGAGAGC-ACCCTGCACTTGGTGCTCCGT 57670 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| ||||||||| | || || || | || Sbjct 57227 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACCCTTGAGGTGGAATCGTCC 57286 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || |||| |||| ||||| ||||| ||||| |||| || Sbjct 57287 GACACTATCGACAACG-TCAAGCAAAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCA 57345 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||||| ||| ||||| ||||| || |||| ||||| | | ||||||||| Sbjct 57346 GCAGCGTCTCATTTTCGCCGGCAAGCAGCTTGAAGACGGCCGCACTTTGAGCGACTACAA 57405 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| | || || ||| | || || ||| Sbjct 57406 CATTCAGAAGGAGTCTACCCTTCATCTCGTTCTTCGT 57442 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || ||||| ||||||||| |||| |||||| | | || | | | | | | || || Sbjct 57023 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGATACCATTGACAATGTCAAGCAA 57082 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || || | ||||| ||||| |||||| ||||||| ||||| | |||| || ||||| Sbjct 57083 AAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATTTTTGCCGGCAAG 57142 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA 38434 ||| |||| || | |||||||| ||||||||||||||| ||||| Sbjct 57143 CAGTTGGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGA 57189 Score = 100 bits (110), Expect = 3e-16 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| || || || | || |||||| | | Sbjct 57683 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATTACGCTGGAAGTCGAGTCTTCG 57742 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 || | | || |||| | || |||| |||| ||||| ||||| || |||||| |||| Sbjct 57743 GATACGATTGATAACG-TGAAGCAAAAGATCCAGGACAAGGAGGGTAT-CCCGCCTGACC 57800 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || || || ||| |||| || | || |||||| || |||| Sbjct 57801 AGCAGCGTCTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGGACCCTCTCTGATTACA 57860 Query 38422 ACATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||| || ||||| ||| || || || ||||||||||| | | ||||||| Sbjct 57861 ACATTCAGAAGGAGAGC-ACTCTTCACTTGGTGCTGCGCCTCCGTGGCGGCC 57911 >seq81 Length=180685 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| || |||||| | || || ||| | | | Sbjct 25341 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTAGC 25282 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 25281 GACACCATCGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 25222 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || || | ||||||||| |||||||||| Sbjct 25221 CAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 25162 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| ||| || || || | ||||| || Sbjct 25161 ATCCAGAAGGAGAGC-ACCCTCCACCTCGTGCTTCG 25127 >seq43 Length=285406 Score = 118 bits (130), Expect = 1e-21 Identities = 137/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACA-GCGT 38311 ||||| || || ||||||||||| |||||||| |||| || ||| || |||||| | | Sbjct 263554 TTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGAGGTTGAGTCCTCCGACACGATT 263495 Query 38312 GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | || | | || | || || | ||||| ||||| || || ||||||| ||||| || Sbjct 263494 GACAATG-TCAAGCAGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAGCAGCGCCT 263436 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 |||| || ||||| ||||| || || | ||||||||| ||||||||||||||| || Sbjct 263435 GATTTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 263376 Query 38432 GG 38433 || Sbjct 263375 GG 263374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170561726720