Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq171 242 5e-59 seq6 111 2e-19 seq86 107 2e-18 seq29 86.0 8e-12 >seq171 Length=76701 Score = 242 bits (268), Expect = 5e-59 Identities = 432/629 (69%), Gaps = 6/629 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || || || | ||||| ||||||||||| Sbjct 4428 TCGAAATCCTCACCACCCAAGTGAGTGTCACCGGCAGTAGACTTGACCTCAAAGATACCC 4369 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | | || ||||| || ||||||||||| || || || ||||| ||| Sbjct 4368 TCCTCAATGGTGAGGAGAGAGACATCGAAGGTACCACCACCGAGATCGAAGATGAGGACG 4309 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || ||||| ||||||||||| || || || || || || || || Sbjct 4308 TTGCGCTCACCCTCGACCTTCTTGTCGAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCG 4249 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| ||||||||||| | || || || || || || || Sbjct 4248 TTGATGATACGGAGGACGTTGAGGCCAGCAATGAGACCGGCGTCCTTGGTGGCCTGACGC 4189 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || ||||| |||||||| || || || ||||| |||| | || | ||||| Sbjct 4188 TGAGAGTCGTTGAAGTAGGCGGGAACGGTGACGACGGCGTTGTTAACGGTGCCGCCGAGG 4129 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || ||| | || ||||| || || | ||| | || ||||| || | | Sbjct 4128 TAGGCCTCAGCGGTCTCCTTCATCTTCTGGAGGATCATGGCGGAGATCTCCTCGGGGGTG 4069 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 || || || || || || || || || | || | ||| || || ||| | | Sbjct 4068 AAGACCTTGGTCTCGCCCTTGAACTCGACCTGGATGACGGGCTT---GCCACCACGGTCG 4012 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || ||||| | | | | ||||||||| | ||||||| |||| || ||||| | Sbjct 4011 ATGACCTTGAAGGGGAAGTGCTTCATATCGGCCTGGACCTCGGGGTCGGAGAACTTGCGA 3952 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || |||||||| ||||| || || ||||| ||||||||||| |||||||| Sbjct 3951 CCAATGAGACGCTTGGCATCGAAGACGGTGTTGGCCGGGTTCATGGCGACCTGGTTCTTG 3892 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || |||| ||||| || | || || || |||||| |||| ||||| || Sbjct 3891 GCGGCATCACCGACGAGACGCTC---GGTGTCGGTGAAAGCGACGAACGAGGGGGTGGTG 3835 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTC 8085 || || || ||||| || ||||| ||||| Sbjct 3834 CGGTTACCCTGGTCATTGGCAATGATTTC 3806 Score = 82.4 bits (90), Expect = 1e-10 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | |||| || || ||||| || || ||||||||||| || || ||||| || Sbjct 4761 CGGAAAAGGTCCTGGCAAAGCTCCTCGAAGCGAGCACGGGTAATAGAGGTGTAGAAGTCG 4702 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | || ||| | | || || || ||||||| || || || | ||||| | || ||| Sbjct 4701 ATACCCTCGAAGAGAGAGTCGATCTCAATGGAGGTCTGGGCAGAAGAAGAGAGAGTACGC 4642 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || || ||||| || || || || | ||| || || ||||| | ||| ||| | || Sbjct 4641 TTGGCACGCTCGCAAGCAGTGCGGAGACGGCGGAGAGCACGAGCGTTGGTGGAGAGGTCC 4582 Query 7406 TTCTTATG 7413 ||||| || Sbjct 4581 TTCTTGTG 4574 >seq6 Length=466918 Score = 111 bits (122), Expect = 2e-19 Identities = 206/302 (68%), Gaps = 3/302 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || | |||||| | || || || || ||||| || ||||| |||| ||| Sbjct 114795 TCGAAGTCCTGACCACCAAGATGGGTGTCACCAGCGGTGGCCTTGACGGTGAAGACACCA 114736 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || | ||||| | | || ||||| || ||||||||||| || || | ||||| ||| Sbjct 114735 CCCTGGATGTTGAGGAGGGAGACATCGAAAGTACCACCACCGAGATCGTAGATGAGGACG 114676 Query 7577 TT---CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || | | || | ||||| | |||||||||| || || || || || || || Sbjct 114675 TTGCGCTCCTTGTTGGACTTGTTGGCACCGAGACCGTAGGCAATGGCGGCAGCGGTGGGC 114616 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || || ||||| || ||| ||||| ||||| | | ||||| || || || || Sbjct 114615 TCGTTGATGATACGGAGGACGTTGAGGCCGGCAATGGCACCAGCATCCTTGGTAGCCTGA 114556 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || ||||| |||||||| ||||| || | ||| || | | || ||||| || Sbjct 114555 CGCTGGTTGTCGTTGAAGTAGGCAGGGACAGTGATGACAGCCTTCTCAACCTTCTTGCCA 114496 Query 7754 AG 7755 || Sbjct 114495 AG 114494 >seq86 Length=170212 Score = 107 bits (118), Expect = 2e-18 Identities = 342/530 (65%), Gaps = 9/530 (2%) Strand=Plus/Minus Query 105454 CCTTCAGATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGA 105513 ||||| |||||| || ||||| ||| |||| ||||| | |||||| ||||| | ||| Sbjct 126923 CCTTCCTTTTCGTACTTTTCGTACAGAGCTTCGAACTCGTCACCGTAAACGTCGGCAAGG 126864 Query 105514 CCCTTTGCCTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATG 105573 || || | ||| || | | | ||| | || | ||||| || |||||| Sbjct 126863 CCAGGGCACTCGTGAGGGCACATGAGAGTCCACTGGCCGTTCTGCTCAACACGCTTCATG 126804 Query 105574 AACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCT 105633 || | ||| || ||||| | ||| ||||| || ||| | | ||||||| | ||| Sbjct 126803 AAAAGATCGGGGATCCAGAGGGCAAGGAAGAGATCGCGAGCGCGCACCTCTTCCTTACCG 126744 Query 105634 TGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACT 105693 || ||| || | || || || |||| | |||||||||||| || || | |||| Sbjct 126743 TGGTTCTTGCGGAGGTCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCGAGGTAGATG 126684 Query 105694 GCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTA 105747 || | || || | ||||| || | || | || || | ||||| ||| Sbjct 126683 GCGAAAGCACC---AGGACGCTTGTTGCCACCCTGGTCAACGTAGCGGGCGGTGTTGTTG 126627 Query 105748 TACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGAT 105807 | || || | ||| |||| ||||| | |||||| || || || ||| || | || Sbjct 126626 AAGACACGGAGCATGGGAACGATACCGTTGGATGTGCCGTTGGTACCAGCGATGTAGGAG 126567 Query 105808 TTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGC 105867 | | ||||| | ||| | || | || ||||| |||||| |||| ||| Sbjct 126566 CCAGTGGCACGAATGCGGTGGATGTTGAGACCGATACCGCCAGCCATCTTAGAGATCATG 126507 Query 105868 GCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGG 105927 || || || | |||||||| || || |||||||| |||||||| | | | |||| Sbjct 126506 GCGCAGGTCTTGAGGGTATCGTAGATGCCCTCGATACTGTCTTCCTTCATGTCGACCAGG 126447 Query 105928 AAACACGATGACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGG 105977 || ||||| || | || || ||| ||||| || ||||| || || || Sbjct 126446 AAGCACGAAGAGAGCTGGGGCTGGGGAGTACCGGCGTTGAAGAGGGTGGG 126397 >seq29 Length=336331 Score = 86.0 bits (94), Expect = 8e-12 Identities = 201/303 (66%), Gaps = 3/303 (1%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| || ||||| | || || || || ||||| | || || || | ||| Sbjct 187141 ATCGAAATCCTCTCCACCAAGATGGGTGTCACCAGCGGTAGACAAAACCTCGAAAACACC 187200 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 |||||| | | || ||||| || || |||||||||| ||| | | || | Sbjct 187201 CTGCTCAATGGAAAGAAGGGAGACATCGAAAGTGCCACCACCCAAGTCGTAGACGATGA- 187259 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || || ||||||| |||||||| ||||||||||| || || || || Sbjct 187260 --TCTGACGCTCCTCACCAGTCTTATCAAGACCGTAGGCGATAGCCGCGGCGGTAGGCTC 187317 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | ||| || || ||| || || ||||| | | || || || || || || || Sbjct 187318 GTTGACAATGCGGAGGACGTTGAGACCGGCAATCATACCGGCGTCCTTGGTGGCCTGGCG 187377 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| |||||||| || || || || || |||| || || ||||| || || Sbjct 187378 CTGGTTGTCGTTGAAGTAGGCGGGAACGGTAACAACGGCGTGAGTAACCTTCTTGCCAAG 187437 Query 7756 ATA 7758 || Sbjct 187438 GTA 187440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129957780720