Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq86 271 9e-68 seq46 122 1e-22 seq62 109 7e-19 seq36 93.3 5e-14 >seq86 Length=170212 Score = 271 bits (300), Expect = 9e-68 Identities = 907/1394 (65%), Gaps = 33/1394 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || || |||||||| || || || |||| || Sbjct 126289 CCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCTGGGGAGACGACGTTGAGCGGGTC 126348 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || ||||||| | |||| |||||| | || ||||||||| Sbjct 126349 ATTGAGACTTACAACCTCATGTCCCTCAAGACCTTCACCCACGCTTCTCCCACCCTCTTC 126408 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 ||||| ||||| || ||||| | || || ||||| | | | ||||| || Sbjct 126409 AACGCCGGTACTCCCCAGCCCCAGCTCTCTTCGTGCTTCCTGGTCGACATGAAGGAAGAC 126468 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 ||| | ||||| |||| || |||| || ||| ||||| ||| |||||| Sbjct 126469 AGTATCGAGGGCATCTACGATACCCTCAAGACCTGCGCCATGATCTCTAAGATGGCTGGC 126528 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACAA 111909 |||||||| | ||||||| | | |||| | ||| || | | ||||| | Sbjct 126529 GGTATCGGTCTCAACATCCACCGCATTCGTGCCACT--GGCTCCTACATCGCTGGTACCA 126586 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || ||| | ||||| |||| ||||| || || || ||| ||| || ||||| | Sbjct 126587 ACGGCACATCCAACGGTATCGTTCCCATGCTCCGTGTCTTCAACAACACCGCCCGCTACG 126646 Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | |||| | ||| ||||| || || |||| |||| || ||||| |||| Sbjct 126647 TTGACCAGGGTGGCAACAAGCGTCCT---GGTGCTTTCGCCATCTACCTCGAGCCTTGGC 126703 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 |||| ||| || | ||||||||||| | || ||||| ||| | || |||| ||| Sbjct 126704 ACGCCGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGTAAGGAAGAGGTGCGCG 126763 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 |||||||||||| || |||||||| || ||||| ||||||||| | |||||| ||| Sbjct 126764 CTCGCGATCTCTTCCTTGCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTTGAGCAGA 126823 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 ||| | ||| ||||| | || || || || || || || |||| | |||| Sbjct 126824 ACGGCCAGTGGACTCTCATGTGCCCTCACGAGTGCCCTGGCCTTGCCGACGTTTACGGTG 126883 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGT 112261 | ||||| ||||| || ||| ||||||||| ||| ||| | | | | || ||| || Sbjct 126884 ACGAGTTCGAAGCTCTGTACGAAAAGTACGA-AAAGGAAGGCAAGGGTC-GCAAGACCGT 126941 Query 112262 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 | || | || | | ||| | || || ||| || | || || ||||| || | || | Sbjct 126942 -CAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCCCAGACTGAGACGGGCAACCCCT 127000 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 ||||| ||||| || ||||| |||| |||||||| || ||||| ||||| ||| Sbjct 127001 TCATGCTCTACAAGGATGCCTGCAACCGCAAGAGTAACCAGAAGAACCTGGGTACCATCC 127060 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440 || |||||||| || || || || | || | | | |||||| || || | Sbjct 127061 GCAGCTCCAACCTGTGCACTGAGATTATCGAGTACTCTGCTCCGGATGAGGTTGCCGTTT 127120 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT--GA 112498 | ||||| || || |||| || || | | | || | || || | | || || Sbjct 127121 GCAACCTTGCCTCTCTCGCCCTTTCCGCCTTTATCGA--CTACGAGAATGCCTCTTACGA 127178 Query 112499 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGA 112558 | | || || ||||| || || || ||| ||||| |||| | ||||| Sbjct 127179 CTTCAAGAAGCTGCACGAGGTCACTCAAGTCGTCGTCCGCAACCTCAACAAGATCATTGA 127238 Query 112559 TAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGG 112618 | || ||||||||| || || | || || ||| | |||||||| ||||| Sbjct 127239 CATCAACCACTACCCCGTTAAGGAGGCCCACAACAGCAACATGCGTCACCGTCCCATTGG 127298 Query 112619 TCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG-CATTTGATTCCG 112677 | ||||||| || ||||| || |||| ||| || | || || | | || ||||| | Sbjct 127299 TGTCGGTGTTCAGGGTCTTGCTGATGCTTTC-TTGGCTCTCCGCATGCCCTTCGATTCTG 127357 Query 112678 ACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGG 112737 ||| || | | |||| | || || ||||| || || |||||||||||| | Sbjct 127358 ACGCGGCTAGCAAGCTCAACATCCAGATTTTCGAGACCATCTACCACGCCGCTCTTACTG 127417 Query 112738 CGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 112797 | || || | || ||| | || || || | |||| || || || || | | Sbjct 127418 CCTCTTGCCAGCTCGCCAAGGAGCAGGGCCCGTACGCCACCTACGAAGGCTCGCCCGTCT 127477 Query 112798 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA----GACCAAGCTTCACTACGAC 112853 | || || | || |||| || |||| |||| || | ||||| || || ||| Sbjct 127478 CCCAGGGAATCCTCCAATACGACATGT-GGAACGTCACCCCTACCAACCT---CTGGGAC 127533 Query 112854 TGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCA 112913 ||| |||||||||| ||||||| || | ||| |||| |||||||| || | || Sbjct 127534 TGGACTGCTCTCAAGGCGGACATCAAGAAGTACGGTGTTCGCAACAGTCTGCTGCTTGCT 127593 Query 112914 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTAC 112973 || ||||| || || ||||| | || || | || || || || ||||| || || ||| Sbjct 127594 CCTATGCCCACTGCTTCCACTTCTCAGATTCTTGGCAACAACGAGTGCTTCGAGCCTTAC 127653 Query 112974 ACGACGAACATCTA 112987 || | |||||||| Sbjct 127654 ACCTCTAACATCTA 127667 >seq46 Length=277877 Score = 122 bits (134), Expect = 1e-22 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 ||||||| |||| ||| |||| ||||| || ||||||||||||||| ||| | | Sbjct 256317 CCTTTGCCCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCTT 256258 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 || | | || | |||||||||||||| ||||||||||| || || ||| ||||||| Sbjct 256257 TCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCTTACCTTTTCCAACG 256198 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| ||||| ||||| ||||| |||||| || ||||| Sbjct 256197 AGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGC 256158 >seq62 Length=222237 Score = 109 bits (120), Expect = 7e-19 Identities = 277/414 (67%), Gaps = 18/414 (4%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 ||| |||||||| || || | || || | |||||||| || || || || |||| Sbjct 125075 ATCGAAGCGACCGGGACGCATAAGAGCCTTGTCAAGGATGTCGGGTCGGTTGGTACCGGC 125134 Query 15947 GATGACAACAATACCTGTTTCGTT--ATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 || ||| || |||||| | ||| || || |||||||||||||| | || |||||| Sbjct 125135 GAGGACGAC--TACCTGCTCAGTTGTATTGAATCCATCCATCTCTGTAAGAATCTGGTTG 125192 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTG--------CT 16056 | || || || || || || || || || ||| | ||| | | Sbjct 125193 AGGGTAGCCTCGCGCTCGTCGTTTCCTC-CACCCCTGAAGC-CGCCGTCGGAACGAGACC 125250 Query 16057 TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTT 16116 || | |||||| || ||||| ||||||| |||||| || || | || || Sbjct 125251 GACCAATGGCATCGATTTCATCGATGAAGATGATGCAGGGAGCGTTCTTCCGCGCCGTGG 125310 Query 16117 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--C 16174 |||||||||| || ||||| || || ||||| ||||||||||| || || | | | Sbjct 125311 CAAAGAGATCACGGACACGGGACGCACCGACACCGACAAACATCTCGACGAATTCGGAAC 125370 Query 16175 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 || || || || | |||||| || | |||||||| ||| | || ||| || ||||| Sbjct 125371 CGCTGA-CACTGAA-GAAGGGAACCTGCGATTCACCGGCAGTCGCCTTGGCAAGCAGAGT 125428 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 |||||| ||||| || ||| | |||| ||||| || || |||||||| || Sbjct 125429 CTTACCGGTACCGGGGGGACCAGACAGGATAGCACCACGAGGGATCTTGGCACC 125482 >seq36 Length=304849 Score = 93.3 bits (102), Expect = 5e-14 Identities = 299/464 (64%), Gaps = 0/464 (0%) Strand=Plus/Plus Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898 |||| ||||||||||| |||| |||||| || | ||||||||| | | || |||| Sbjct 10709 AACCGGTACCGATACCATCTGCACCGTTAACCAAAACCATGGGAATAATGGGAGCATAGA 10768 Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 175958 | |||||||| | |||||||| | | | ||| | || ||||| | Sbjct 10769 CCTTGGGCTCAATCAGTTTGCCATCGTCGAACTGGAATTCAAGATTGGGCTCATCGAGAG 10828 Query 175959 GATCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 176018 | | |||||||||||| || | || | || ||| || | | | | Sbjct 10829 GGTGAAAGATCTTTCGCGCCAAGGGAGACAGTCTCGTGTGGATGTAACGAGCGCTGGCAG 10888 Query 176019 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 176078 |||| |||||| ||||||| ||| || | ||| | ||||| ||| ||||| | Sbjct 10889 CATCGGAACCACCGGAAAGACGCGAACCGAAGTTACCGCTAGGCTCGAGACAGTTGATGT 10948 Query 176079 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 176138 |||||||||| | ||| | ||||| | |||||| | | ||||| ||||| Sbjct 10949 TGTTTGAACCGACAAAGTTCTGCGCCAGACCAATAATCGTTTGCTGCAGAGACTGTTCAC 11008 Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 176198 |||||||||| || || || | ||| | | ||||||| | || || || | Sbjct 11009 CGTGGTGGTAGGCTGCCTCCTTGGACACATAACCGGCCAACTCGACAACCTTTTGATCGT 11068 Query 176199 CCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 176258 |||| || | | |||||| || ||| |||||||||||| ||||| ||||||| Sbjct 11069 GAATGAGGTTTTGCTTGAAACAGCCGAACAGAACCTTGCGTTGACCGGGCTTCAGACCAT 11128 Query 176259 CCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAG 176302 || ||||| | ||| || || | ||| |||| ||||||| Sbjct 11129 CCACCATGGACGGGATCGATCGAATGTTGTCTGCCATACTGAAG 11172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739622177760