Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq86 246 4e-60 seq62 163 3e-35 seq46 86.0 7e-12 >seq86 Length=170212 Score = 246 bits (272), Expect = 4e-60 Identities = 1023/1591 (64%), Gaps = 55/1591 (3%) Strand=Plus/Minus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGA---TGATACACTTT 109563 ||||| |||||||| ||||| ||||||||| || ||||| | || || ||| || Sbjct 127913 GACTGGGACTGATCAATGAAGGCACCACGATCGGCAGCCATCTTGACAATGGTACGCT-- 127856 Query 109564 TGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATG 109623 | ||| |||||||| ||||| || | | |||||| |||| ||||||| |||| Sbjct 127855 -GAGAAATCTCCCAGACGGTCTTATAGAGAGCCTTGATGTCATTGGGAATGCTTTGGATG 127797 Query 109624 TTTTGAATAGAGCCACCAGCCTTCACCA----TGAGATCCTTCATCTCTTTCGACCAGAG 109679 || || ||||| || ||| ||| || || | | |||||| | | ||||| || Sbjct 127796 TTCTGGATAGAACC----GCCCTCAGCAATGATGCGGTTCTTCATGGCATCAGACCAAAG 127741 Query 109680 ACCGACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAG 109739 || | || ||||| | ||| |||||| || || || || || || Sbjct 127740 GCCCATCTCCACAAGATCCCTGAGAAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAG 127681 Query 109740 TGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGAT 109799 ||||| |||||||||||| ||||| || ||||| ||||| |||||||| || || Sbjct 127680 CACACGTCGTTGGTAGATGTTAGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGAAT 127621 Query 109800 TTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGT 109859 || | ||||||||| |||||||| ||||| | || |||||||| || | ||| | | | Sbjct 127620 CTGAGAAGTGGAAGCAGTGGGCATAGGAGCAAGCAGCAGACTGTTGCGAACACCGTACTT 127561 Query 109860 CTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATT--TAGTCTCACCA 109917 ||| | || ||| ||| | | || | || | || ||| | Sbjct 127560 CTTGATG---TC-CGCCTTGAGAGCAGTCCA----GTCCCAGAGGTTGGTAGGGGTGACG 127509 Query 109918 TCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTAC 109977 | |||||| || ||| || | |||| | | || || || | | | | ||||| Sbjct 127508 TTCCACATGTCGTATTGGAGGATTCCCTGGGAGACGGGCGAGCCTTCGTAGGTGGCGTAC 127449 Query 109978 GACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCA 110037 | |||| ||| ||| | || | | || || || || || || || || ||||| Sbjct 127448 GGGCCCTGCTCCTTGGCGAGCTGGCAAGAGGCAGTAAGAGCGGCGTGGTAGATGGTCTCG 127389 Query 110038 AAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACC-ACAAAGAAT 110096 ||||| || || | || || | | ||| | |||||||| | | | | || Sbjct 127388 AAAATCTGGATGTTGAGCTTGCTAGCCGCGTCAGAATCGAAGGGCATGCGGAGAGCCAAG 127329 Query 110097 AAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC- 110155 ||| |||| || |||||||||||||||| ||||||||| || || |||||| || Sbjct 127328 AAAG-CATCAGCAAGACCCTGAACACCGACACCAATGGGACGGTGACGCATGTT---GCT 127273 Query 110156 GTCGAGCAGTTTCT--ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGT 110213 || | | | || |||||||| |||| ||| |||| | ||||| || Sbjct 127272 GTTGTGGGCCTCCTTAACGGGGTAGTGGTTGATGTCAATGATCTTGTTGAGGTTGCGGAC 127213 Query 110214 CACAGTCTTC-GTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGA 110272 || | ||| |||| || || || || | | | ||| | | |||| | | || Sbjct 127212 GAC-GACTTGAGTGACCTCGTGCAGCTTCTTGAAGTCGTAAGAGGCATTCTCGTAGTCGA 127154 Query 110273 CATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGT 110332 | | || || || | ||| ||||| ||||| || | | ||| || | | || Sbjct 127153 TAAAGGCGGAAAGGGCGAGAGAGGCAAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGT 127094 Query 110333 ATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCG 110392 | || | ||| || || |||| |||||| || ||| ||||| ||||||||| || Sbjct 127093 ACTCGATAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTAC 127034 Query 110393 ATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACT 110452 ||| |||||| |||||||| ||||||||| | ||| | || || || ||||| | || Sbjct 127033 TCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCT 126974 Query 110453 TGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCT 110509 ||| ||||| | ||| | | || | ||| ||| || |||| | | ||||||| Sbjct 126973 CGAGGATGGCATACCAAAGCTTCTG-GGCCTTGACGGTCTTGCG--ACCCTTGCCTTCCT 126917 Query 110510 CCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCG 110569 |||||||| ||||| | || || || | ||||| || || | ||| || Sbjct 126916 TTTCGTACTTTTCGTACAGAGCTTCGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGC 126857 Query 110570 CCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGT 110629 || || || || | ||| | ||| | || || |||||| | ||||||||| || | Sbjct 126856 ACTCGTGAGGGCACATGAGAGTCCACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGAT 126797 Query 110630 CAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGA 110689 | || ||||| | || ||| || || || || ||||||| | ||| ||||| Sbjct 126796 CGGGGATCCAGAGGGCAAGGAAGAGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCT 126737 Query 110690 GGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGG 110749 ||| || || | || || | || ||| | |||||| || ||||| |||| |||| | Sbjct 126736 TGCGGAGGTCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAG 126677 Query 110750 ATCCCTTACGACGA------CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCC 110803 || | |||| || |||||| ||| ||||| || ||| |||||||| | Sbjct 126676 CACC---AGGACGCTTGTTGCCACCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACAC 126620 Query 110804 TGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGG 110863 |||||| |||| || || | |||| || || ||||| || ||| | ||| Sbjct 126619 GGAGCATGGGAACGATACCGTTGGATGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTGG 126560 Query 110864 CACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-C 110922 |||||||| |||||| | | ||| ||||| || ||| |||| || || || Sbjct 126559 CACGAATGCGGTGGATGTTGAGACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGG 126500 Query 110923 TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAA 110982 ||| |||| ||| | || || || || || ||| |||| || | | || ||||| Sbjct 126499 TCT-TGAGGGTATCGTAGATGCCCTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCAC 126441 Query 110983 GAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAAC 111042 ||||| | ||| || | || || || || |||||||| || || | || || ||| Sbjct 126440 GAAGAGAGCTGGGGCTGGGGAGTACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGA-- 126383 Query 111043 AGACCTT--GGGACATCTTGTTGTATGTGTC 111071 || ||| ||||||| |||||| || || Sbjct 126382 AGGTCTTGAGGGACATGAGGTTGTAAGTCTC 126352 >seq62 Length=222237 Score = 163 bits (180), Expect = 3e-35 Identities = 346/505 (69%), Gaps = 20/505 (4%) Strand=Plus/Plus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 |||||| ||||| || || | ||||| | ||||| || ||| ||||| ||| |||| Sbjct 125075 ATCGAAGCGACCGGGACGCATAAGAGCCTTGTCAAGGATGTCGGGTCGGTTGGTACCGGC 125134 Query 11565 AATGACTACAATGCCAGTCTCA-TTGTC--GAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 | ||| || | || | |||| |||| ||| || ||||| ||||| |||| |||||| Sbjct 125135 GAGGACGACTA--CCTG-CTCAGTTGTATTGAATCCATCCATCTCTGTAAGAATCTGGTT 125191 Query 11622 GATCGTCTGTTCACGCTCATCGTTGG----AGGGCATA--CCACCTGCCGAACGCTTCTT 11675 || || || ||||| ||||| | | | || || | ||||| | Sbjct 125192 GAGGGTAGCCTCGCGCTCGTCGTTTCCTCCACCCCTGAAGCCGCCGTCGGAACGAGACCG 125251 Query 11676 ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTC 11735 ||| | || || || ||||||||||| | ||| || || ||| || ||| | Sbjct 125252 ACCAATGGCATCGATTTCATCGATGAAGATGATGCAGGGAGCGTTCTTCCGCGCCGTGGC 125311 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CG 11793 || || ||||| ||||| ||| || ||||| || |||||||| ||||| | | | Sbjct 125312 AAAGAGATCACGGACACGGGACGCACCGACACCGACAAACATCTCGACGAATTCGGAACC 125371 Query 11794 GCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 || || ||||||| ||||||||| | || ||||| || | || || || |||||| Sbjct 125372 GCTGA-CACTGAA-GAAGGGAACCTGCGATTCACCGGCAGTCGCCTTGGCAAGCAGAGTC 125429 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTC 11911 ||||| ||||| || | ||||| || | || ||||| |||||||||||||| |||| Sbjct 125430 TTACCGGTACCGGGGGGACCAGACAGGATAGCACCACGAGGGATCTTGGCACCGAGCTTC 125489 Query 11912 CAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGG 11971 | ||||||| |||| ||||||||| | |||| |||| || || ||||||| Sbjct 125490 --TGGAAGCGCTCGGGCTCCTTGAGGAACTGGACAAACTCCATAATCTCGACCTTGGCCT 125547 Query 11972 AGTCGATACCCTCAACATCGGTGAA 11996 || |||||| | ||||||| ||| Sbjct 125548 CATCCATACCCGCGACATCGGAGAA 125572 >seq46 Length=277877 Score = 86.0 bits (94), Expect = 7e-12 Identities = 337/522 (65%), Gaps = 10/522 (2%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || ||||| || ||||||||||| || ||| ||| || Sbjct 256157 GGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAAAAGGTAAGGCC 256216 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| || | ||||| ||||| ||||||| ||| || |||||||| Sbjct 256217 AGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGAT 256276 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTCG---A 119670 ||||| || || || |||| ||||||| || |||||| ||| ||||||| | Sbjct 256277 ACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGC-AAAGGTGGAGCTCTTGTCGGTAA 256335 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGA 119730 ||| |||||||||| ||||| ||||| |||| || | || || | || Sbjct 256336 TCCAGCGAAGAGCCCAGTCAGCCTTTTTGCGGATGCAAGGGATGGTGTCAATAGCGTTGA 256395 Query 119731 AAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCT 119790 | || | || | | | ||||| || || | || ||||| |||||||||| Sbjct 256396 AGAGGTAGGTCCTCTGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGAGGGAGTAGGTCT 256455 Query 119791 CACCATGAACCAT-TTCATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATT 119849 | |||| | | ||| || ||| | | || || ||||||| |||| || Sbjct 256456 CGGAGTGAATGTTCTCCATCATG-ATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATC 256514 Query 119850 TGCACTTCGTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCG 119909 || |||||| || || | | || || ||| ||||| |||||||| ||||| Sbjct 256515 TGGACTTCGCCACTGAAGCGCTCGACGAGGTTCTCATTGACAATACCATCGGAGGCAGCG 256574 Query 119910 AAGAATGCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGA--GTGTT-TTCCAG 119966 ||||| || | |||| ||||| || || | ||||| | |||| |||||| Sbjct 256575 AAGAAAGCGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCGTTCAACCTGTTGTTCCAG 256634 Query 119967 TCGTCCATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAG 120008 |||| | || || || | || | ||| || || |||||| Sbjct 256635 TCGTGAAGGTCCTTGGAGAGATCAATCTCCTCGGCGGTCCAG 256676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588973364332400