Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq86 297 2e-75 seq46 102 1e-16 seq62 91.5 2e-13 >seq86 Length=170212 Score = 297 bits (328), Expect = 2e-75 Identities = 1127/1752 (64%), Gaps = 59/1752 (3%) Strand=Plus/Minus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 ||||| |||||||| ||||||||||| || ||||| || | |||||| | Sbjct 128012 CGGAGGTAGTACATGCCGGTCTTGAGACCCATCTTCCAGCCGGCGAAATGCATGCTGGTA 127953 Query 105650 AGCTTGGACATCGTTGGACTTTC---CATGAAAAGATTCAT--ACTTTGACTCTGGTCAA 105704 | |||| ||| || || ||| |||| || || | ||| |||| | |||| Sbjct 127952 ATCTTGCCCATGGTGGG---TTCGCGCATGTGAATGTTGAGGGACTGGGACT--GATCAA 127898 Query 105705 TGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTG---ATTTCCCACA 105761 ||||| |||||| | || ||||| | ||||| | || || ||||| | Sbjct 127897 TGAAGGCACCACGATCGGCAGCCATCT---TGACAATGGTACGCTGAGAAATCTCCCAGA 127841 Query 105762 CTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCC 105821 | || |||||| |||||| |||| || || | ||| || || || ||||| | Sbjct 127840 CGGTCTTATAGAGAGCCTTGATGTCATTGGGAATGCTTTGGATGTTCTGGATAGAACCGC 127781 Query 105822 CCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCAT 105881 || | | ||| | | |||||| | | |||||||| || |||| | ||||| Sbjct 127780 CCTCAGCAATGATGCGGTTCTTCATGGCATCAGACCAAAGGCCCATCTCCACAAGATCCC 127721 Query 105882 TGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGT 105941 ||| || |||||| | | ||||| || ||||| | || | ||||||| Sbjct 127720 TGAGAAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGCACACGTCGTTGGTAGATGT 127661 Query 105942 TCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTG 106001 | | ||||| || || ||||| || || || || | || || | ||||| || || | Sbjct 127660 TAGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGAGAAGTGGAAGCAGTGG 127601 Query 106002 GCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAA 106061 |||| || || | || |||||||| |||| ||| | | ||||||| |||||||| Sbjct 127600 GCATAGGAGCAAGCAGCAGACTGTTGCGAACACCGTACTTCTTGATGTCCGCCTTGAGAG 127541 Query 106062 CATCCCAGTCGTAGTTGAGCTTGGTT----TCACCTTCCCACATATCAAATTGAAGCACC 106117 || |||||| || || ||||| | || |||| |||| || |||| || | Sbjct 127540 CAGTCCAGTCCCAG---AGGTTGGTAGGGGTGACGTTCC-ACATGTCGTATTGGAGGATT 127485 Query 106118 CCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCA 106177 || ||||| ||| || || || | || | || | || || | | || | | Sbjct 127484 CCCTGGGAGACGGGCGAGCCTTCGTAGGTGGCGTACGGGCCCTGCTCCTTGGCGAGCTGG 127425 Query 106178 CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTG 106237 || || || | ||||| || ||||| || || || | || | || | Sbjct 127424 CAAGAGGCAGTAAGAGCGGCGTGGTAGATGGTCTCGAAAATCTGGATGTTGAGCTTGCTA 127365 Query 106238 GCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 106292 || | || ||||| || |||| || | || ||| |||| || ||||| | Sbjct 127364 GCCGCGTCAGAATCGAAGGGCATGCGGAGAGCCAAGAAAG-----CATCAGCAAGACCCT 127310 Query 106293 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGAT 106352 ||||||| | |||||| || | ||| ||||| || || | || || |||||| | Sbjct 127309 GAACACCGACACCAATGGGACGGTGACGCATGTTGCTGTTGTGGGCCTCCTTAACGGGGT 127250 Query 106353 AAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAA 106412 | || ||||||||| ||| || || | || | | |||| || || | Sbjct 127249 AGTGGTTGATGTCAATGATCTTGTTGAGGTTGCGGACGACGACTTGAGTGACCTCGTGCA 127190 Query 106413 GTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATG 106472 | || | | || ||| | | |||| | | || | | | |||||||| || | Sbjct 127189 GCTTCTTGAAGTCGTAAGAGGCATTCTCGTAGTCGATAAAGGCGGAAAGGGCGAGAGAGG 127130 Query 106473 CCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGT 106532 | | |||||||| || ||||||| | | | |||||| | ||| || || |||| || Sbjct 127129 CAAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTCAGTGCACAGGT 127070 Query 106533 TGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGT 106592 |||| || || || |||| ||||| ||||||||||| |||||| |||||||||| Sbjct 127069 TGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGGCATCCTTGT 127010 Query 106593 AGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CATCG 106651 |||||||| |||| | |||||||| ||||| | || ||| || || | ||| | | || Sbjct 127009 AGAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCT 126950 Query 106652 GCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTGTGTAGAGGGCT 106708 | | || | | || ||| | || | || ||| ||||||||| ||| || ||| Sbjct 126949 GGGCCTTG----ACGGTCTTGCGACCCTTGCCTTCCTTTTCGTACTTTTCGTACAGAGCT 126894 Query 106709 TCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 106768 || ||||| ||||| |||||| || || || || || || || | |||| | Sbjct 126893 TCGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCACATGAGAGTC 126834 Query 106769 CATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 106828 || || || || |||||| |||||||||||||| || || ||||| |||| ||| Sbjct 126833 CACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCAAGGAAG 126774 Query 106829 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATG 106888 ||||| | | || ||||||| | ||| ||||| || | ||||||||||| | | Sbjct 126773 AGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAGGAACTCGAAG 126714 Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCA 106942 | ||| |||||||| ||||| || |||| |||| || || ||||| ||| Sbjct 126713 ACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACC---AGGACGCTTGTTGCCA 126657 Query 106943 GCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCT 107002 | || | || ||||| || ||| ||| || || || ||||| |||| ||||| | Sbjct 126656 CCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTTG 126597 Query 107003 GATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCA 107060 ||| || || || || ||| || ||| | |||| | | ||||||| | Sbjct 126596 GATGTGCCGTTGGTACCAGCGATGTAGGAG--CCAGTGGCACGAATGCGGTGGATGTTGA 126539 Query 107061 TCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATAC 107120 || ||||| |||||| ||| ||||| || || | | || || | ||||| | Sbjct 126538 GACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTAGATGC 126479 Query 107121 CGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG 107180 | | ||| ||| ||||| || ||| |||||||| || | ||| || || | Sbjct 126478 CCTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAG 126419 Query 107181 TACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT--GGGACATCTTGTC 107238 |||| || ||||||||||| || | ||||| |||| | ||| ||||||| || Sbjct 126418 TACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAAGGT--CTTGAGGGACATGAGGTT 126361 Query 107239 GTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAA 107298 ||| ||||| | ||| |||| ||| || || ||| |||| || |||||||| | Sbjct 126360 GTAAGTCTCAATGACCCGCTCAACGTCGTCTCCCCAGATACCGACAGCAACACGCATGAT 126301 Query 107299 CATGTATTGGGG 107310 ||||| ||||| Sbjct 126300 CATGTGCTGGGG 126289 >seq46 Length=277877 Score = 102 bits (112), Expect = 1e-16 Identities = 341/522 (65%), Gaps = 9/522 (2%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||||||||||||||| ||||| || || || || || ||| ||||| Sbjct 256157 GGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAAAAGGTAAGGCC 256216 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| |||||||| | ||| | || | | ||| | ||| ||||||||| Sbjct 256217 AGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGAT 256276 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAA 117451 |||||| || ||||| || | || |||| ||| |||| | ||| |||| | || Sbjct 256277 ACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAGGTG-GAGCTCTTGTCGGTAA 256335 Query 117452 ACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAA 117511 ||| | ||||| | ||||| || || || || | || | || || | | Sbjct 256336 TCCAGCGAAGAGCCCAGTCAGCCTTTTTGCGGATGCAAGGGATGGTGTCAATAGCGTTGA 256395 Query 117512 ATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTT 117571 | | | || | | || ||||| ||||| |||| || | || || || | Sbjct 256396 AGAGGTAGGTCCTCTGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGAGGGAGTAGGTCT 256455 Query 117572 CGCCATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATC 117630 || |||| | | ||| ||| | || | ||||||| |||| || ||| ||| Sbjct 256456 CGGAGTGAATGTTCTCCATCATGATCTGGA-AACCGTAGAAGCAGCGAGCCTCGGGGATC 256514 Query 117631 TGCACTTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 117689 || ||||| || | || | | || |||||| ||||| |||||||| |||| Sbjct 256515 TGGACTTC-GCCACTGAAGCGCTCGACGAGGTTCTCATTGACAATACCATCGGAGGCAGC 256573 Query 117690 AAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCA 117746 ||||| || || |||| ||||| ||| || | || |||| | | ||||| Sbjct 256574 GAAGAAAGCGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCGTTCAACCTGTTGTTCCA 256633 Query 117747 GTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 117788 ||||| ||| || ||||| | ||||| || || || ||||| Sbjct 256634 GTCGTGAAGGTCCTTGGAGAGATCAATCTCCTCGGCGGTCCA 256675 >seq62 Length=222237 Score = 91.5 bits (100), Expect = 2e-13 Identities = 273/414 (66%), Gaps = 18/414 (4%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 ||| |||||||| ||||| | || || | |||||||| || || || || |||| Sbjct 125075 ATCGAAGCGACCGGGACGCATAAGAGCCTTGTCAAGGATGTCGGGTCGGTTGGTACCGGC 125134 Query 9254 GATGACAACAATACCTGTTTCATT--ATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || ||| || |||||| | || || || |||||||||||||| | || ||||| Sbjct 125135 GAGGACGAC--TACCTGCTCAGTTGTATTGAATCCATCCATCTCTGTAAGAATCTGGTTG 125192 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTG--------CT 9363 | || || || || || || || || || ||| | ||| | | Sbjct 125193 AGGGTAGCCTCGCGCTCGTCGTTTCCTC-CACCCCTGAAGC-CGCCGTCGGAACGAGACC 125250 Query 9364 TTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTT 9423 || | |||||| || ||||| ||||||| || || || || | || || | Sbjct 125251 GACCAATGGCATCGATTTCATCGATGAAGATGATGCAGGGAGCGTTCTTCCGCGCCGTGG 125310 Query 9424 CAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--C 9481 |||||||||| || || | || || ||||| ||||||||||| || || | | | Sbjct 125311 CAAAGAGATCACGGACACGGGACGCACCGACACCGACAAACATCTCGACGAATTCGGAAC 125370 Query 9482 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9541 || || || || | |||||| || | |||||||| ||| | || ||| || ||||| Sbjct 125371 CGCTGA-CACTGAA-GAAGGGAACCTGCGATTCACCGGCAGTCGCCTTGGCAAGCAGAGT 125428 Query 9542 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 |||||| ||||| || ||| | |||| ||||| || || |||||||| || Sbjct 125429 CTTACCGGTACCGGGGGGACCAGACAGGATAGCACCACGAGGGATCTTGGCACC 125482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589978159835920