Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq18 158 3e-33 seq86 111 3e-19 seq43 98.7 2e-15 >seq18 Length=383124 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||| || ||||| || ||||| ||||| ||| | ||| | || ||||| Sbjct 57436 AACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCTTC 57377 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || ||||| || || || || || || ||||||||||| || |||||||| Sbjct 57376 AAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCTTG 57317 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || |||||||||||||| || || ||||| || |||||| |||||||| | ||||| Sbjct 57316 GATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCACCTCAAGGGTGATGGTCTT 57257 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | |||||| Sbjct 57256 GCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 Score = 131 bits (144), Expect = 4e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| || || || ||||| |||| ||| || | ||||| || Sbjct 57207 ACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCC 57148 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || || || | || || ||||| || |||||||| || ||||| ||| Sbjct 57147 AACTGCTTGCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 57088 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||||||||||| || |||||||| ||||| || || || ||||| | ||||| Sbjct 57087 ATCTTTTGCTTGACATTGTCAATGGTATCCGACGACTCGACCTCGAGGGTGATGGTCTTG 57028 Query 195112 CCTGTCA 195118 || |||| Sbjct 57027 CCGGTCA 57021 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||| ||| || ||||| ||||| |||| || || | ||||| |||||||| Sbjct 57658 GTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGCTG 57599 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || || || || || || || || || || ||||| || || || Sbjct 57598 CTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGGATCTT 57539 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| ||||| || |||||||| ||| || || || || |||| |||||| || || Sbjct 57538 TTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTAATCGTCTTGCCGGT 57479 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 57478 AAGCGTCTTAACGAAAATCTGCAT 57455 >seq86 Length=170212 Score = 111 bits (122), Expect = 3e-19 Identities = 187/268 (70%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 160595 GCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTT 160654 ||| |||||| ||||||||||||||||| | || | | || || | |||| || Sbjct 126781 GCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTTGAGCAGAACGGCCAGTGGACTCTC 126840 Query 160655 TTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTT 160714 | || || | || ||||| |||| || ||||| ||| ||||||||| |||| Sbjct 126841 ATGTGCCCTCACGAGTGCCCTGGCCTTGCCGACGTTTACGGTGACGAGTTCGAAGCTCTG 126900 Query 160715 TATGAAAGATACGAAAAAGAGGG-AAGAGCCAAAAAGGTCGTGAAGGCCCAAGAACTGTG 160773 || |||| |||||||| || || ||| | | || | ||| |||||||| | || || Sbjct 126901 TACGAAAAGTACGAAAAGGAAGGCAAGGGTCGCAA-GACCGTCAAGGCCCAGAAGCTTTG 126959 Query 160774 GCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGC 160833 | || |||||| | ||||| ||| ||| | ||||| || ||||||||||| Sbjct 126960 GTATGCCATCCTCGAGGCCCAGACTGAGACGGGCAACCCCTTCATGCTCTACAAGGATGC 127019 Query 160834 CATCTGTCGCAAGAGTAACCAGAAGAAC 160861 | | ||||||||||||||||||||| Sbjct 127020 CTGCAACCGCAAGAGTAACCAGAAGAAC 127047 >seq43 Length=285406 Score = 98.7 bits (108), Expect = 2e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| |||| || || | ||||| ||||||||||| || || || || Sbjct 263376 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATC 263435 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || || || || || ||||| ||||| || |||||||| || ||| Sbjct 263436 AGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTGACATTGTCA 263495 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || ||||| || || || || || || | ||||| || || | || || ||||| Sbjct 263496 ATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 263554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109476510946586