Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq81 118 7e-22 seq43 113 3e-20 seq18 109 4e-19 >seq81 Length=180685 Score = 118 bits (130), Expect = 7e-22 Identities = 148/201 (74%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| ||||| ||||| || ||| | || |||| || ||||| || ||| Sbjct 25145 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 25204 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 || || || || || |||||||| | || | ||||||||||| |||||||| ||| Sbjct 25205 GCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTG 25264 Query 34905 ACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAG 34960 || || | ||||| || | | ||| || || | ||| || || || |||||||| Sbjct 25265 AC--AT--TGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAG 25320 Query 34961 AGTCTTCACAAAGATCTGCAT 34981 |||||||| ||||||||||| Sbjct 25321 GGTCTTCACGAAGATCTGCAT 25341 >seq43 Length=285406 Score = 113 bits (124), Expect = 3e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| || ||| | || |||| || ||||| || || ||||| || Sbjct 263376 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATC 263435 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| |||| | ||||||||||| ||||||||| ||||| | Sbjct 263436 AGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTGACATTGTCA 263495 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 |||| || || |||||| |||| || ||||| || |||||||| ||||| || ||| Sbjct 263496 ATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 263555 >seq18 Length=383124 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||||| || ||||||||||| || || || ||| | || |||| ||| Sbjct 57891 ACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTCCGGCCATCCTCC 57832 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || ||||| || || || |||||||| |||| | ||||||||||| Sbjct 57831 AACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGG 57772 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || || ||| | |||| || | ||| || || | || || || || Sbjct 57771 ATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGACTTCCAGCGTAATCGTCTTG 57712 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| | ||||| || || ||||||||| Sbjct 57711 CCCGTCAAGGTCTTGACGAAAATCTGCATA 57682 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || ||||||||||| ||||| || ||| | || |||| || Sbjct 57663 ACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCG 57604 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || || ||||| || | || | ||||||||||| Sbjct 57603 AGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGG 57544 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || || ||| | || | || | |||||| |||| || || || || Sbjct 57543 ATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTAATCGTCTTG 57484 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| || || ||||||||| Sbjct 57483 CCGGTAAGCGTCTTAACGAAAATCTGCATA 57454 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| |||||| | || |||| |||| ||| || |||||||| Sbjct 57189 TCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCAAAA 57130 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC 34906 || | || |||||||| | || | ||||||||||| |||||| || ||||| Sbjct 57129 ATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTTTGCTTGAC 57074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632183583024