Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25]
358 sequences; 40,416,174 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq18 96.9 3e-14
>seq18
Length=383124
Score = 96.9 bits (106), Expect = 3e-14
Identities = 157/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTCT 563315
||||| || || |||||||||||| || || ||| ||||| || ||| | ||| |
Sbjct 57444 AGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTC-GCTCAAAGTGCG 57386
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
|||||||| || || ||||| ||||| || | |||||||| |||||||| || ||
Sbjct 57385 GCCGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATGCCCTC 57326
Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434
|| ||||| || ||||| || || || || || || | || | || || || |
Sbjct 57325 CTTGTCTTGGATCTTTTGCTTGACGTTGTCGATAGTGTC-GGACGATTCCACCTCAAGGG 57267
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
| | || || || |||||||| || ||||| |||||||||
Sbjct 57266 TGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCATA 57226
Score = 93.3 bits (102), Expect = 3e-13
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
|||||||| || | || ||||| || || || ||| ||||| || | || || |
Sbjct 57672 AGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGA 57613
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
||| || || || ||||| || ||||| || | ||||||||||| || || || ||
Sbjct 57612 CCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGGATACCCTCC 57553
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435
|| || || || ||||| ||||| || || || || | || | | ||||||||
Sbjct 57552 TTGTCCTGGATCTTTTGCTTTACGTTGTCGATGGTGTC-GGAAGACTCAACCTCGAGAGT 57494
Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| || || || ||||| || ||||||||||| ||||||
Sbjct 57493 AATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCATA 57454
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029277067345420
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |