Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq100 93.3 3e-14 >seq100 Length=149193 Score = 93.3 bits (102), Expect = 3e-14 Identities = 265/401 (66%), Gaps = 10/401 (2%) Strand=Plus/Minus Query 29988 CACGTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30044 ||| |||||||| | ||||| || || || || || |||| ||| || ||| || Sbjct 125605 CACATAAAACTGCGCAAACATG---TGACAAGGCGGCAGCACCATCTGGCTCATGTCCTT 125549 Query 30045 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAG-GTCCA 30103 ||||||||| || | || || | | | || | |||||||| | || ||| ||| | Sbjct 125548 GGGGTTCCATGCACTCAGAATCAGTCTGCGATCGTACGGGTTGTTGCGGA-GAGTGTCGA 125490 Query 30104 CGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG-CCCTCATGTCCGTGTAC 30162 | | || || || ||||| ||| ||| | ||| || | | | || || ||| Sbjct 125489 TGATGCGCTGGAGTTGGTCCACGCCCTGCCCGGTGTAATCGGTCTCGCA-ATCGACGTAT 125431 Query 30163 TCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30222 || || || || |||| ||| ||||| || || || || || ||||| || |||| | | Sbjct 125430 TCGGCGCCAAAGTGCCGCCATTGGAAACCATATACGGGACCTAGGTCACCTTCTTTGCGG 125371 Query 30223 TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 30282 || | || | |||| | ||| | | ||| ||||| | |||||||| || || Sbjct 125370 TGGGAAAGACCGAGCATGTCGAGGAAGGCGCGGGATCCGTTACCATCCCAGATTTTGACT 125311 Query 30283 CCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 30342 |||| |||||||| ||||| || || | || |||||| || ||||| Sbjct 125310 CCCTGGGCGGAGAGCGTGGTGGAGGAGGTCGAGGCGGAGATGAACCAGAGGAGCTCGAGG 125251 Query 30343 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 | |||||| || ||||||| ||||||||| ||||| || Sbjct 125250 AGGACGGCTTTGGTGAAGACCCGCTTGGTCGTAAGGAGCGG 125210 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 29776 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCG 29835 || ||||| | ||| ||||| ||||| |||| ||||| || | || ||||| || || Sbjct 125904 CTCGGCTCGCGCTCCAGCTGCGTCTTGAGCGCGTCCACATGGTTGAGATAGACATGCGCA 125845 Query 29836 TCTCCCAGGGTGTGGA-CAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 29894 || |||| ||| ||| ||| ||||| | | | ||||| || | ||||| Sbjct 125844 TCGCCCATAACATGGGTCAAGCTC-CCCGGCACCAAGTCACACACGTGCGCGAGCATGTG 125786 Query 29895 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 29954 ||| || || | ||||||||| ||||||||||| || || || |||||||| | |||||| Sbjct 125785 CGTCAGCAGCGCGTAGCTGGCAATGTTAAAGGGCACACCCAGTCCCATGTCACACGACCT 125726 Query 29955 CTGGTAGAGCTGACA 29969 || || | ||| || Sbjct 125725 TTGATACAACTGGCA 125711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615817150334