Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq18 140 3e-28 >seq18 Length=383124 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||| | ||| | |||||||||||| || || || || ||||| ||| Sbjct 57453 CCACCGCGTAGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTC 57394 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | | || || | ||||| || || || || | |||||| |||||||| ||| Sbjct 57393 AAAGTGCGGCCGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGA 57334 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||| || || ||||| || ||||| || || | || | |||||| |||| |||||| Sbjct 57333 ATGCCCTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCACC 57274 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || |||||||| | ||| || || || || ||||| Sbjct 57273 TCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396276670987806