Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq18 154 1e-32 seq118 82.4 6e-11 seq81 82.4 6e-11 >seq18 Length=383124 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| |||||| || || |||||||| || ||||| ||||||||||| Sbjct 57910 GCCGCCACGGAGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGA 57851 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||||||||||||| ||||| ||||| ||||| || || | || Sbjct 57850 GAGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGG 57791 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| |||||||| || || | | | | || || | ||| || Sbjct 57790 GATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGAC 57731 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||||||| || |||||||| || || || ||||||||||| Sbjct 57730 TTCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || |||||||| || ||||| ||||| || || || | ||| Sbjct 57672 AGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGA 57613 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || || || ||||| ||||| | || | |||||| Sbjct 57612 CCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGGATACCCTCC 57553 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||||| ||||| | | | || || | ||| ||||| | ||| Sbjct 57552 TTGTCCTGGATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTA 57493 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || | || || || ||||||||||| Sbjct 57492 ATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || || || | || | || ||||||||||| |||||||| Sbjct 57190 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCAAA 57131 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| ||||| || || | ||||| |||||||||||| ||||||||| || ||| Sbjct 57130 AATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTTTGCTTGACATT 57071 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 | | | || |||| ||| ||||| | || || || || || |||| Sbjct 57070 GTCAATGGTATCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCA 57021 >seq118 Length=126874 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 9106 TCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTA 9165 || |||| || ||||||||||| ||| || || |||||||| | || || | Sbjct 98258 TCGCCCTCGTTGACGACAAAGTCCACGTCCGAGTGGTTGAACAGGAGAACCTTGACTTGG 98317 Query 9166 CCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGT 9225 || | ||| || | ||||| || || || || ||||| ||||||| |||| | ||||| Sbjct 98318 CCGCGGTAGTCGGCGTCGATGACGCCGGCGCCAACGTCAATGAAGTTCTTGGCTGCTAGG 98377 Query 9226 CCAGAGCGGGGCGCGATTCGACCGT 9250 || |||||||| ||||| || |||| Sbjct 98378 CCGGAGCGGGGGGCGATGCGGCCGT 98402 >seq81 Length=180685 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || |||||||| || || || ||||| || || || | || | || || | |||| Sbjct 25139 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGC 25198 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| || || | ||| | |||||||||||| ||||| Sbjct 25199 TTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 25258 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || ||| | | | || | ||||||||| | || || || || ||||| Sbjct 25259 TGCTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 25318 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 25319 AGGGTCTTCACGAAGATCTGCAT 25341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380935937921634