Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25]
358 sequences; 40,416,174 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq18 154 1e-32
seq118 82.4 6e-11
seq81 82.4 6e-11
>seq18
Length=383124
Score = 154 bits (170), Expect = 1e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
|||||| | || |||| |||||| || || |||||||| || ||||| |||||||||||
Sbjct 57910 GCCGCCACGGAGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGA 57851
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
|| | || | || |||||||||||||| ||||| ||||| ||||| || || | ||
Sbjct 57850 GAGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGG 57791
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
| ||||||||||| |||||||| || || | | | | || || | ||| ||
Sbjct 57790 GATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGAC 57731
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||||||| || |||||||| || || || |||||||||||
Sbjct 57730 TTCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683
Score = 105 bits (116), Expect = 5e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || || |||||||| || ||||| ||||| || || || | |||
Sbjct 57672 AGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGA 57613
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || || | |||||| || || || || || ||||| ||||| | || | ||||||
Sbjct 57612 CCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGGATACCCTCC 57553
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| |||||||| ||||| | | | || || | ||| ||||| | |||
Sbjct 57552 TTGTCCTGGATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTA 57493
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || || || | || || || |||||||||||
Sbjct 57492 ATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455
Score = 91.5 bits (100), Expect = 1e-13
Identities = 122/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || || ||||| || || || | || | || ||||||||||| ||||||||
Sbjct 57190 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCAAA 57131
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| ||||| || || | ||||| |||||||||||| ||||||||| || |||
Sbjct 57130 AATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTTTGCTTGACATT 57071
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744
| | | || |||| ||| ||||| | || || || || || ||||
Sbjct 57070 GTCAATGGTATCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCA 57021
>seq118
Length=126874
Score = 82.4 bits (90), Expect = 6e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 9106 TCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTA 9165
|| |||| || ||||||||||| ||| || || |||||||| | || || |
Sbjct 98258 TCGCCCTCGTTGACGACAAAGTCCACGTCCGAGTGGTTGAACAGGAGAACCTTGACTTGG 98317
Query 9166 CCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGT 9225
|| | ||| || | ||||| || || || || ||||| ||||||| |||| | |||||
Sbjct 98318 CCGCGGTAGTCGGCGTCGATGACGCCGGCGCCAACGTCAATGAAGTTCTTGGCTGCTAGG 98377
Query 9226 CCAGAGCGGGGCGCGATTCGACCGT 9250
|| |||||||| ||||| || ||||
Sbjct 98378 CCGGAGCGGGGGGCGATGCGGCCGT 98402
>seq81
Length=180685
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || |||||||| || || || ||||| || || || | || | || || | ||||
Sbjct 25139 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGC 25198
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| ||||| || ||||| ||||| || || | ||| | |||||||||||| |||||
Sbjct 25199 TTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 25258
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| || ||| | | | || | ||||||||| | || || || || |||||
Sbjct 25259 TGCTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTG 25318
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
| || || || || ||||||||
Sbjct 25319 AGGGTCTTCACGAAGATCTGCAT 25341
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380935937921634
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |