Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq86 381 1e-100 seq46 192 1e-43 >seq86 Length=170212 Score = 381 bits (422), Expect = 1e-100 Identities = 1122/1699 (66%), Gaps = 70/1699 (4%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | || | ||||||||||| || || || ||||||||||||||||| Sbjct 128048 ACAGTGAACTGGATGGGCTGAGCAGCAGCCTGCGTACGGAGGTAGTACATGCCGGTCTTG 127989 Query 212613 AGGCCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGG 212672 || ||| | ||||||| | ||||| |||| |||| || | Sbjct 127988 AGACCCATCTTCCAGCCGGCGAAATGCAT-GCTGG--------------TAATCTT--GC 127946 Query 212673 TCATCCTCG--TGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCC 212730 ||| | | | || || || | ||| |||||||| ||| || ||||| | | | Sbjct 127945 CCATGGTGGGTTCGCGCATGTGAATGTTGAGGGACTGGGACTGATCAATGAAGGCACCAC 127886 Query 212731 TGTCAGCGGCCATGT---CTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGA 212787 || || ||||| | | ||| || | ||| || | |||||| |||||||| ||| Sbjct 127885 GATCGGCAGCCATCTTGACAATGGTA---CGCTGAGAAATCTCCCAGACGGTCTTATAGA 127829 Query 212788 TTTCTTTGAGGTCCTCTGGGAA-GCCGGGGATGTTCTGCACAGACCC--CCTGTGTA-TG 212843 | |||| ||| | |||||| || |||||||||| | ||| || ||| | | || Sbjct 127828 GAGCCTTGATGTCAT-TGGGAATGCTTTGGATGTTCTGGATAGAACCGCCCTCAGCAATG 127770 Query 212844 GTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGG 212903 | | | | |||| | || ||| |||||| | | | || | ||| || Sbjct 127769 ATGCGGTTCTT---CATGGCATCAGACCAAAGGCCCATCTCCACAAGATCCCTGAGAAGC 127713 Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 |||||||| | |||||| || || | |||||| | | ||||| | ||| || ||| Sbjct 127712 CAGGGGTTGACGACCTGGAACTCGCCGGCGAGCACACGTCGTTGGTAGATGTTAGAGGTG 127653 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 || ||||||| || ||||||||| || |||||||| | |||| || |||||||| ||| Sbjct 127652 TAAGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGAGAAGTGGAAGCAGTGGGCATAGGA 127593 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGA-AGCTCTGCCCA 213082 || | ||| |||||||| | || |||| || |||| |||| || | | ||| Sbjct 127592 GCAAGCAGCAGACTGTTGCGAACACCGTACTTCTTGATGTC-CGCCTTGAGAGCAGTCCA 127534 Query 213083 GTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCC 213142 |||||| || ||| || |||||||||||||| | || | ||| || Sbjct 127533 GTCCCAG-----AGGTTGGTAGGGGTG----ACGTTCCACATGTCGTATTGGAGGATTCC 127483 Query 213143 TTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCA 213202 | | ||||| ||| | ||| | || ||| ||||| ||||||||||| |||| ||| Sbjct 127482 CTGGGAGACGGGCGAGCCTTCGTAGGTGGCGTACGGGCCCTGCTCCTTGGCGAGCTGGCA 127423 Query 213203 GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGC 213262 || || || || |||| ||||||||| || || |||| |||||||||| | || Sbjct 127422 AGAGGCAGTAAGAGCGGCGTGGTAGATGGTCTCGAAAATCTGGATGTTGAGCTTGCTAGC 127363 Query 213263 CTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCC 213322 | | || ||||||||| | ||| ||||||| || ||||| || || Sbjct 127362 CGCGTCAGAATCGAAGGGCATGCGGAGAGCCAAGAAAGCATCAGCAAGACCCTGAACACC 127303 Query 213323 GATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTT 213382 || || ||||| | ||| | || ||| ||| | ||||| | |||||| ||| Sbjct 127302 GACACCAATGGGACGGTGACGCATGTTGCTGTTGTGGGCCTCCTTAACGGGGTAGTGGTT 127243 Query 213383 GCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTC 213442 | ||| ||||||||||||||||||||| | | |||| ||||| | | ||| | || Sbjct 127242 GATGTCAATGATCTTGTTGAGGTTGCGGACGACGACTTGAGTGACCTCGTGCAGCTTCTT 127183 Query 213443 GTGATTG-AACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGT 213501 | | | || | | | | | || | | ||| | | ||||||| ||| |||| Sbjct 127182 GAAGTCGTAAGAGGCATTCTC-GTAGTCGATAAAGGCGGAAAGGGCGAGAGAGGCAAGGT 127124 Query 213502 TGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGC 213561 |||||||||| ||||| | | | | |||||| || ||||| |||||||||||| || Sbjct 127123 TGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTCAGTGCACAGGTTGGAGC 127064 Query 213562 ATCGGATGGTGCCCAGGTTCTGGTGGTTTGACT-TTGCGTTGGCAGA-ATCCTTGTAGAG 213619 |||||||| |||||||||| ||||| ||| ||||| | |||| |||||||||||| Sbjct 127063 TGCGGATGGTACCCAGGTTCTTCTGGTT--ACTCTTGCGGTTGCAGGCATCCTTGTAGAG 127006 Query 213620 CATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTG 213677 |||| ||||| || ||||| ||||| | | || || ||| ||| || | | | Sbjct 127005 CATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGAT--GGCATACCAAAGCTTCTGG 126948 Query 213678 GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCT--CGTACTGTTCGTAGAGCTCGT 213735 |||||||| | | ||| || || | | | |||||| |||||| || | | Sbjct 126947 GCCTTGACGGTCTTGC-GAC----CCTTGCCTTCCTTTTCGTACTTTTCGTACAGAGCTT 126893 Query 213736 TGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGA-TGCGGGACACATGAGGCTC 213794 ||| |||| || | || | | || || || || || ||| |||||||| || Sbjct 126892 CGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGG-CACATGAGAGTC 126834 Query 213795 CAGTCCCCGTCAT-CTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAA 213853 || | |||| | ||| || | || |||||| || || |||| ||| || || ||| Sbjct 126833 CACTGGCCGTTCTGCTCA-ACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCAAGGAA 126775 Query 213854 CAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAA 213913 || || | | | | ||| ||| || ||| ||||| || || || || || || Sbjct 126774 GAGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAGGAACTCGAA 126715 Query 213914 GATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCC 213970 || || |||||||| ||||| | ||||||||| || || || || | |||| || || Sbjct 126714 GACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGACGCTTGTTGCCACC 126655 Query 213971 CTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGA 214030 |||||| || | ||| ||||||||| || || | ||| || | |||||||| Sbjct 126654 CTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTTGGA 126595 Query 214031 CTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCC 214089 ||| |||||||| || || || || ||||| | ||| | | | | ||| ||| | Sbjct 126594 -TGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGATGTTGAGAC 126536 Query 214090 CTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGG 214149 | || || || || ||| ||||||||||||||| | | | || || |||||| Sbjct 126535 CGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTAGATGCCCT 126476 Query 214150 CCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGC 214209 | || ||||| || | | || | || |||||| |||||||||||| || | | Sbjct 126475 CGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAGTAC 126416 Query 214210 CAGAGTTGAAAAGCGTGGG 214228 | | |||||| || ||||| Sbjct 126415 CGGCGTTGAAGAGGGTGGG 126397 >seq46 Length=277877 Score = 192 bits (212), Expect = 1e-43 Identities = 487/729 (67%), Gaps = 15/729 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || | | || |||||||| Sbjct 255866 CTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTC 255925 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||| | | | || | | | || ||| | | || | Sbjct 255926 CATGAAGTCGAAGGGGTTAGTCGACCTGTAGATCT-TCTCGTTGCCGAGGGCGACAAGGA 255984 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| |||||| |||||||||| | ||||||| | ||||||||| | |||| Sbjct 255985 GACGATCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGAAGGG 256044 Query 48018 A-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTAT-CTGCACGGCTTCCCCCACAAT 48075 || ||| | |||| ||||| ||||||| ||| || ||| ||||| || | | || Sbjct 256045 CGCAAGGG-AGGGCCTCAGTGAGGAACTCCTGCTCAATTCTG-ACGGCATCGACAATGAT 256102 Query 48076 CTGCTTAACGCGGGACT--CTGAGG-GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 | || | | || ||| || | |||||| ||||| | |||| | ||| Sbjct 256103 TTCCTGGATCAGCTGCTTGCTGGGGCGGTTGTTG---AGGTGAGAGA---AGAGAAGGCA 256156 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| |||| | || || || ||| ||||||| ||||||| ||| || || Sbjct 256157 GGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAAAAGGTAAGGCC 256216 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 |||||||| || | || ||||||||||| || | ||||||| || ||||||||| Sbjct 256217 AGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGAT 256276 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||||| || || || || ||| ||| | || | || | | | ||||||| | || Sbjct 256277 ACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAGGTGGAGCTCTTGTCGGTAAT 256336 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 |||| ||| |||||||| ||||| || |||||| || || || || || || ||| Sbjct 256337 CCAGCGAAGAGCCCAGTCAGCCTTTTTGCGGATGCAAGGGATGGTGTCAATAGCGTTGAA 256396 Query 48373 GAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 ||| | | | || | ||| | || || || || | ||| |||| Sbjct 256397 GAGGTAGGTCCTCTGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGAGGGAGTAGGTCTC 256456 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || ||||||||| ||||||||| | ||||| | ||| Sbjct 256457 GGAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATCTG 256516 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 ||||| ||| | ||| | || ||||||||||| || ||||| || ||||| || Sbjct 256517 GACTTCGCCACTGAAGCGCTCGACGAGGTTCTCATTGACAATACCATCGGAGGCAGCGAA 256576 Query 48553 GAAGGCAAG 48561 ||| || || Sbjct 256577 GAAAGCGAG 256585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931528631390720