Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq86 253 4e-62 seq46 203 6e-47 >seq86 Length=170212 Score = 253 bits (280), Expect = 4e-62 Identities = 952/1469 (65%), Gaps = 67/1469 (5%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || || || ||||||||||||||||| || ||| ||||||| | | ||| || | Sbjct 127415 GTAAGAGCGGCGTGGTAGATGGTCTCGAAAATCTGGATGTTGAGCTTGCTAGCCGCGTCA 127356 Query 221477 GAAGTGAAGGGCATACGCAGCATCT-GAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||||||||| || || | ||||| | || || || ||||| || |||| ||| Sbjct 127355 GAATCGAAGGGCATGCGGAGAGCCAAGAAAG-CATCAGCAAGACCCTGAACACCGACACC 127297 Query 221536 GATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 ||||| | ||| | | ||||| | | || | || || ||||| || ||||| | Sbjct 127296 AATGGGACGGTGACGCATGTTGCTGTTGTGGGC-CTCCTTA-ACGGGGTAGTGGTTGATG 127239 Query 221594 TCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGA 221653 || || | ||||||||||| | || ||||| | |||||| |||||||| Sbjct 127238 TCAATGATCTTGTTGAGGTTGCGGACGACGACTTGAGTGACCTCGTGCAGCTTCT----- 127184 Query 221654 TTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTG 221713 |||| | | | | |||| | || | ||| ||| ||||| | | Sbjct 127183 -TGAAGTCGTAAGAGGCATTCTCGTAG------TCGATAAAGGCGGAAAGGGCGAGAGAG 127131 Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || ||||| || ||||| ||||| ||| | |||| || ||||| || || ||| Sbjct 127130 GCAAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTCAGTGCACAGG 127071 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||| || |||||| ||||||| || || ||| |||||| ||| || |||||| Sbjct 127070 TTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGGCATCCTTG 127011 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 |||||||| ||||| ||| ||||| ||| ||| | || || | ||| || | | Sbjct 127010 TAGAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATACCAAAGCT-T 126952 Query 221894 CTGGCGCTC-ACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGGTATA 221946 |||| || || ||| | |||| || | ||| |||||| ||| | Sbjct 126951 CTGGGCCTTGACGGTCTTGCGACCCTTGCCTTCCTTTTCGTACTTTTCGTAC-------A 126899 Query 221947 GAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACAT 222006 |||| | | |||| |||||||| | ||| | ||||| || ||| | || ||||| Sbjct 126898 GAGCTT--CGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCACAT 126841 Query 222007 CAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGC 222066 ||| |||| || ||| | | || | || |||||| || || |||||||| || || Sbjct 126840 GAGAGTCCACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGAGGGC 126781 Query 222067 CTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAA 222126 | |||||||| | | ||| ||| ||| |||| ||| || | || || | || Sbjct 126780 AAGGAAGAGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAGGAA 126721 Query 222127 CTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTT 222186 ||| || | || |||||||| ||||| || |||| ||| | ||| || || |||||||| Sbjct 126720 CTCGAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGACGCTTGTT 126661 Query 222187 GCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 ||||||||| || || | | |||||||| || || | || || | || Sbjct 126660 GCCACCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACC 126601 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC---TCAGGTTACTGGC 222303 ||||||| |||||||| || ||||| | || ||| | | ||| | | Sbjct 126600 GTTGGATGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGAT-GT 126542 Query 222304 AGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 || | |||||||| || || || ||||||||||||||| ||||||| || || Sbjct 126541 TGAGA--CCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTA 126484 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423 ||||||||| ||| ||| ||||| | || | ||| || || || || | ||| | | Sbjct 126483 GATGCCCTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTG 126424 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTA--GACATC 222481 || | || |||||| || || |||||| ||||| || ||| | | | ||||| Sbjct 126423 GGGAGTACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAAG--GTCTTGAGGGACATG 126366 Query 222482 AGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCT 222540 || | ||| ||||| | ||| | | | || ||| ||| || | | | || | Sbjct 126365 AGGTTGTAAGTCTCAATGACCCGCTCAACGTCGTCTCCCCAGATACCG-ACAGCAACACG 126307 Query 222541 CATGTACATGTACTGGGGCCTCTC--CA--CAGGACCCTTGGAGCTGGAGAGCAGGTACG 222596 |||| ||||| |||||| | ||| || | || || | ||||| ||| ||||| | Sbjct 126306 CATGATCATGTGCTGGGGACGCTCAGCAATCTGG--CCATCGAGCTTAAGA--AGGTATG 126251 Query 222597 ATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGG 222656 || ||| || |||||||| || ||||| | | || ||||| | | ||| || | | Sbjct 126250 ATCGTTCGAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATTG 126191 Query 222657 CGGCGTCCAGCTCCGACTTGT---GCTTTACGCTCAACTCGAAAAAGCGCTCAGACACGA 222713 | | ||| | ||| ||||| || | || | ||||| | | | || | | | Sbjct 126190 CCGAGTCGAACTCGTCCTTGTGGCGCATGACAC---ACTCGTATACGTCCTTGGCGATCA 126134 Query 222714 GGGGAGCGTTCTCTTTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAG 222773 ||| | || || | ||| |||||| || | || |||||||| | || | || Sbjct 126133 TGGGGGAGTGCTTTCCGGTCCTGGGGTTGACATAGTTGTACAGCTCGCTGAT--AACGAG 126076 Query 222774 AGAAC---GTGTCGGGAGTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGA 222830 || | | || | ||||||||||| || || ||||||||||| || | || | || Sbjct 126075 CGACCATTGCTTCTTG-GTCTGCTTGTGGAGGTTGGACACGGCGATACGGGCGGCGAGGA 126017 Query 222831 TACCATAGTCAGGGTGCACGGTGGTCATG 222859 | ||||||| ||||| | ||||||| Sbjct 126016 TGGCATAGTCGGGGTGGGTGACGGTCATG 125988 Score = 102 bits (112), Expect = 2e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | |||||| | | ||||| | |||||| ||| | || Sbjct 127707 GTTGACGACCTGGAACTCGCCGGCGAGCACACGTCGTTGGTAGATGTTAGAGGTGTAAGG 127648 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || |||||||||||| || ||||||| ||| || |||||||| || || | Sbjct 127647 CTCGAAGCACTCGTTGTTGCCAAGAATCTGAGAAGTGGAAGCAGTGGGCATAGGAGCAAG 127588 Query 221236 CAGCAGACTGTTGCGCAGTCCGAATCTATTGATG 221269 ||||||||||||||| | ||| | | |||||| Sbjct 127587 CAGCAGACTGTTGCGAACACCGTACTTCTTGATG 127554 >seq46 Length=277877 Score = 203 bits (224), Expect = 6e-47 Identities = 561/857 (65%), Gaps = 24/857 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||||||||| ||||||||||| Sbjct 256711 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATCTC 256652 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 |||||||| | ||| |||| || | || ||||| || | || ||| | Sbjct 256651 TCCAAGGACCTTCACGACTGGAACAACAGGTTGAACGACGACGAGAAGTTCTTCATCTCC 256592 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 || | | || ||||| || ||||| |||||||| || || ||||| || |||| | Sbjct 256591 CACATTCTCGCTTTCTTCGCTGCCTCCGATGGTATTGTCAATGAGAACCTCGTCGAGCGC 256532 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | ||||| ||| | ||||| || ||||||||||||||||| || Sbjct 256531 TTCAGTGGCGAAGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGATG 256472 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||||| ||| || || || || || || ||||| | || | Sbjct 256471 GAGAACATTCACTCCGAGACCTACTCC---CTCCTCATCGACACTTACATCAAGGAGCCC 256415 Query 25771 GCCGAGAGAGATCGGC-TGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 || |||| || | | | || || || || ||| || ||||| | ||||| Sbjct 256414 TCCCAGAG-GACCTACCTCTTCAACGCTATTGACACCATCCCTTGCATCCGCAAAAAGGC 256356 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| | ||||| | | | ||||| | || |||| | |||| || || || Sbjct 256355 TGACTGGGCTCTTCGCTGGATTACCGACAAGAGCTCCACCTTTGCCCAGCGTCTCGTCGC 256296 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 ||||||||| || ||||| ||||| ||||||||| | || || |||||||||||||||| Sbjct 256295 CTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGGCTCAA 256236 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||| || || ||||||||||||||||||| | | || ||||| Sbjct 256235 GAAGCGCGGTCTCATGCCTGGCCTTACCTTTTCCAACGAGCTCATCTCCCGTGATGAGGG 256176 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAA--ACCTTCT 26067 |||||||| || ||||||||||| |||| | | ||| ||| |||| || Sbjct 256175 TCTCCACACCGACTTTGCCTGCCTTCTCTTCTC---TCAC---CTCAACAACCGCCCCAG 256122 Query 26068 CAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 |||| || || | ||||| || || || || ||| ||||||| | Sbjct 256121 CAAGCAGCTGATCCAGGAAATCATTGTCGATGCCGTCAGAATTGAGCAGGAGTTCCTCAC 256062 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | ||||||| || ||||| || Sbjct 256061 TGAGGCCCTCCCTTGCGCCCTTCTTGGCATGAACGCCGACCTCATGAAGCAGTACATCGA 256002 Query 26187 GTATGTGGCCGACCATCTGC-TGT-GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCT 26244 || || ||||| | ||| | ||| ||| || || || | ||||||| || || Sbjct 256001 GTTCGTCGCCGATCGTCTCCTTGTCGCC--CTCGGCAACGAGAAGATCTACAGGTCGACT 255944 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| |||||||| ||||| ||||| || | | || |||||||||||||| || ||| Sbjct 255943 AACCCCTTCGACTTCATGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAG 255884 Query 26305 AGGGTCGGCGACTATCA 26321 | || |||||||| || Sbjct 255883 CGTGTTGGCGACTACCA 255867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928840643419520