Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25]
358 sequences; 40,416,174 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq18 118 7e-21
>seq18
Length=383124
Score = 118 bits (130), Expect = 7e-21
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAGT 480610
|| ||||| || || |||||||| ||| || || || || || || ||| | |||
Sbjct 57447 CGTAGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTC-GCTCAAAGT 57389
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | |||||||| ||||| || || ||||| ||||| || ||||| |||||||| ||
Sbjct 57388 GCGGCCGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATGCC 57329
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||||||||||| |||||||| ||||| || ||||| || | | |||||
Sbjct 57328 CTCCTTGTCTTGGATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCACCTCAAG 57269
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||| || || || ||||| |||||||| ||||| |||||
Sbjct 57268 GGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTG 57230
Score = 102 bits (112), Expect = 5e-16
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || | || || || || || || || || || || | || ||
Sbjct 57676 ACGAAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGT 57617
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| || || ||||||||||| ||||| ||||| || |||||||| || || ||
Sbjct 57616 GCGACCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGGATACC 57557
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| || |||||||| || || || || || || | | | || || |
Sbjct 57556 CTCCTTGTCCTGGATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAA-CCTCGA 57498
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| ||||| || || ||||| || |||||||||||||| ||
Sbjct 57497 GAGTAATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTG 57458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268163843642984
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |