Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq86 279 6e-70 seq46 102 1e-16 seq62 84.2 3e-11 >seq86 Length=170212 Score = 279 bits (308), Expect = 6e-70 Identities = 1123/1752 (64%), Gaps = 59/1752 (3%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| || || |||| ||| || || ||| |||| ||| Sbjct 126289 CCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCTGGGGAGACGACGTTGAGCGGGTC 126348 Query 75272 TTGGAGACATACGACAAGATGTCCC--AAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | ||||| ||| || ||||||| ||| | |||| ||||| | || ||||||| Sbjct 126349 ATTGAGACTTACAACCTCATGTCCCTCAAG--ACCTTCACCCACGCTTCTCCCACCCTCT 126406 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || ||||| || || ||| | || |||||||| ||| || ||||| | Sbjct 126407 TCAACGCCGGTACTCCCCAGCCCCAGCTCTCTTCGTGCTTCCTGGTCGACATGAAGGAAG 126466 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 || ||| | || ||||| | || || | | || || ||||| ||| ||||| Sbjct 126467 ACAGTATCGAGGGCATCTACGATACCCTCAAGACCTGCGCCATGATCTCTAAGATGGCTG 126526 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 75507 | ||||| || | ||||||| | | |||| | ||| || ||| || || Sbjct 126527 GCGGTATCGGTCTCAACATCCACCGCATTCGTGCCACTGG--CTCCTACATCGCTGGTAC 126584 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 || || ||| | ||||| |||| ||||| || || || ||| ||| || ||||| Sbjct 126585 CAACGGCACATCCAACGGTATCGTTCCCATGCTCCGTGTCTTCAACAACACCGCCCGCTA 126644 Query 75568 TGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATG 75621 || | || | || ||||| || | |||| ||||| | || || || Sbjct 126645 CGTTGACCAGGGTGGCAACAAGCGTCCT---GGTGCTTTCGCCATCTACCTCGAGCCTTG 126701 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCG 75681 ||| |||||| || | ||||||||||| | || ||||| ||| | ||||||| || Sbjct 126702 GCACGCCGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGTAAGGAAGAGGTGCG 126761 Query 75682 GTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGA 75741 | | |||||||| |||| ||||| || || |||||||||||||| |||||| | Sbjct 126762 CGCTCGCGATCTCTTCCTTGCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTTGAGCA 126821 Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGG 75801 | || || ||| |||| | || || || || || || || |||||| || Sbjct 126822 GAACGGCCAGTGGACTCTCATGTGCCCTCACGAGTGCCCTGGCCTTGCCGACGTTTACGG 126881 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTA---GAGCCAATGCGAC 75858 ||| ||||| ||||| || ||| |||||| ||| |||| || | | ||| ||| Sbjct 126882 TGACGAGTTCGAAGCTCTGTACGAAAAGTACGAAAAGGAAGGCAAGGGTCGCAA---GAC 126938 Query 75859 TGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACAC 75917 || | || | | || | ||||| | || || ||| | | ||||| ||||| || | | Sbjct 126939 CGT-CAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCCCAGACTGAGACGGGCAACC 126997 Query 75918 CATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAA 75977 | | ||||| ||||||||||| || ||| ||||||||||| ||||| |||| || | Sbjct 126998 CCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGTAACCAGAAGAACCTGGGTACCA 127057 Query 75978 TCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTG 76037 || ||||| || || ||||| || ||| | |||||| | | | ||||||| || | Sbjct 127058 TCCGCAGCTCCAACCTGTGCACTGAGATTATCGAGTACTCTGCTCCGGATGAGGTTGCCG 127117 Query 76038 TTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTG 76097 ||||||| | || || |||||||| | | | || | | |||| | | ||| | Sbjct 127118 TTTGCAACCTTGCCTCTCTCGCCCTTTCCGCCTTTATCGACTACGAGAATGCCTCTTACG 127177 Query 76098 ATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTG 76157 | | | || || || || |||| | | || | || || ||| |||||| Sbjct 127178 ACTTCAAGAAGCTGCACGAGGTCACTCAAGTCGTCGTCCGCAACCTCAACAAGATCATTG 127237 Query 76158 ACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTG 76217 ||| || || |||||| || || | || || ||||| ||| | || |||| Sbjct 127238 ACATCAACCACTACCCCGTTAAGGAGGCCCACAACAGCAACATGCGTCACCGTCCCATTG 127297 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-----TTTGA 76272 || | |||||||| ||||| || |||| ||| || | || |||| || || Sbjct 127298 GTGTCGGTGTTCAGGGTCTTGCTGATG-----CTTTCTTGGCTCTCCGCATGCCCTTCGA 127352 Query 76273 TTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCT 76332 ||| || | || | || | || | || || || ||||| || ||||| | || Sbjct 127353 TTCTGACGCGGCTAGCAAGCTCAACATCCAGATTTTCGAGACCATCTACCACGCCGCTCT 127412 Query 76333 GGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCC 76392 || ||| | | || | | || || | || | || | || || || || Sbjct 127413 TACTGCCTCTTGCCAGCTCGCCAAGGAGCAGGGCCCGTACGCCACCTACGAAGGCTCGCC 127472 Query 76393 CGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGA----AACCAAGCTCAACT 76448 || ||||| || | || || | || |||| |||| || | ||||| || || Sbjct 127473 CGTCTCCCAGGGAATCCTCCAATACGACATGT-GGAACGTCACCCCTACCAACCT---CT 127528 Query 76449 ACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 76508 |||||| || |||||||| ||||||| || | ||| |||| |||||||| || Sbjct 127529 GGGACTGGACTGCTCTCAAGGCGGACATCAAGAAGTACGGTGTTCGCAACAGTCTGCTGC 127588 Query 76509 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 76568 | || || ||||| || || ||||| | || || | || || || || ||||| || | Sbjct 127589 TTGCTCCTATGCCCACTGCTTCCACTTCTCAGATTCTTGGCAACAACGAGTGCTTCGAGC 127648 Query 76569 CATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACA 76628 | ||||| | |||||||||| || | ||||| || ||||| | |||||| Sbjct 127649 CTTACACCTCTAACATCTACCAACGACGTGTGCTCGCCGGCGAGTTCCAGGTCGTCAACC 127708 Query 76629 AGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCA 76688 || ||| || || | |||| || || ||||| | | |||||| | | || Sbjct 127709 CCTGGCTTCTCAGGGATCTTGTGGAGATGGGCCTTTGGTCTGATGCCATGAAGAACCGCA 127768 Query 76689 TGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATC 76748 | | | ||| ||||| || || || ||| | || || |||| |||||| || Sbjct 127769 TCATTGCTGAGGGCGGTTCTATCCAGAACATCCAAAGCATTCCCAATGACATCAAGGCTC 127828 Query 76749 TCTACCGCACAGTGTGGGAAAT---CAAGATGAAAGATGTCATTGACATGGCCGCAGATC 76805 |||| || || ||||| || || | ||||| | ||||| || |||| Sbjct 127829 TCTATAAGACCGTCTGGGAGATTTCTCAGCGTACCATTGTCA---AGATGGCTGCCGATC 127885 Query 76806 GTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATG---GAAAGTCCAAC 76860 ||||| ||||||||||| |||| ||| | || | |||| ||| || || Sbjct 127886 GTGGTGCCTTCATTGATC--AGTCCCAGTCCCTCAACATTCACATGCGCGAA---CCCAC 127940 Query 76861 GATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAAT 76920 ||| |||| | | |||||| | || ||||| ||| ||||| ||||| || Sbjct 127941 CATGGGCAAGATTACCAGCATGCATTTCGCCGGCTGGAAGATGGGTCTCAAGACCGGCAT 128000 Query 76921 GTACTATCTCCG 76932 |||||| ||||| Sbjct 128001 GTACTACCTCCG 128012 >seq46 Length=277877 Score = 102 bits (112), Expect = 1e-16 Identities = 341/522 (65%), Gaps = 9/522 (2%) Strand=Plus/Minus Query 64714 TGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCC---TGAAT 64770 ||||| || || || ||||| | ||||| || ||| |||||||||| | | |||| Sbjct 256675 TGGACCGCCGAGGAGATTGATCTCTCCAAGGACCTTCACGACTGGAACAACAGGTTGAAC 256616 Query 64771 GAAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATT 64830 || | || ||| ||||| |||| || || ||||| |||| |||||||| ||| Sbjct 256615 GACGACGAGAAGTTCTTCATCTCCCACATTCTCGCTTTCTTCGCTGCCTCCGATGGTATT 256556 Query 64831 GTTTTTGAGAATATCAATAA-CAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 || |||||| || | | || | || ||||| ||||| ||| || |||| Sbjct 256555 GTCAATGAGAACCTCGTCGAGCGCTTCAGTGGC-GAAGTCCAGATCCCCGAGGCTCGCTG 256497 Query 64890 ATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||||| | || | ||| ||| | | |||| ||| || || || | | Sbjct 256496 CTTCTACGGTT-TCCAGATCATGATGGAGAACATTCACTCCGAGACCTACTCCCTCCTCA 256438 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTG 65008 | |||| ||||| ||||| || | | || | | || | || || | || Sbjct 256437 TCGACACTTACATCAAGGAGCCCTCCCAGAGGACCTACCTCTTCAACGCTATTGACACCA 256378 Query 65009 TACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGC 65067 | || || || || ||||| | ||||| | ||| || | |||| ||| | Sbjct 256377 TCCCTTGCATCCGCAAAAAGGCTGACTGGGCTCTTCGCTGGATTACCGACAAGAGCTC-C 256319 Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||| ||| |||| || | || ||||| || ||||||||||||||| ||| | Sbjct 256318 ACCTTTGCCCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCT 256259 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 ||| | | || | ||| | |||||||| ||||||||||| ||||| ||| || || Sbjct 256258 TTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCTTACCTTTTCCAAC 256199 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || ||||| ||||||||||||||| || |||||| Sbjct 256198 GAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCC 256157 >seq62 Length=222237 Score = 84.2 bits (92), Expect = 3e-11 Identities = 209/312 (67%), Gaps = 8/312 (3%) Strand=Plus/Minus Query 175192 GATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAAG 175251 ||||| | ||| || || | ||||| | || || ||| |||| | || |||||| Sbjct 125566 GATGTCGCGGGTATGGATGAGGCCAAGGTCGAGATTATGGAGTTTGTCCAGTTCCTCAAG 125507 Query 175252 CAACCCGAGAGATATTTTGGAAGT--GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGG 175309 | |||||| | | | |||| |||||||||||||| || || || | || | | Sbjct 125506 GAGCCCGAGCGCT--TCCAGAAGCTCGGTGCCAAGATCCCTCGTGGTGCTATCCTGTCTG 125449 Query 175310 GTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCC 175369 || || ||||| || ||||| || || ||| || | || |||||||| | || | Sbjct 125448 GTCCCCCCGGTACCGGTAAGACTCTGCTTGCCAAGGCGACTGCCGGTGAATCGCAGGTTC 125389 Query 175370 CATTCATCCAGTGCTCTGCCG--CAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAA 175427 | ||| || |||| || || | | | || || ||||||||||| ||||| ||||| Sbjct 125388 CCTTCTTC-AGTG-TCAGCGGTTCCGAATTCGTCGAGATGTTTGTCGGTGTCGGTGCGTC 125331 Query 175428 AAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGA 175487 | || || |||||||||| | || || | || || || || ||||||| || Sbjct 125330 CCGTGTCCGTGATCTCTTTGCCACGGCGCGGAAGAACGCTCCCTGCATCATCTTCATCGA 125271 Query 175488 TGAGATTGATGC 175499 ||| || ||||| Sbjct 125270 TGAAATCGATGC 125259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596566930351040