Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq18 87.8 3e-12 >seq18 Length=383124 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || ||||| || | | || | || ||||| || ||||||||||| || | | Sbjct 57865 AATGTTGTAATCAGAGAGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACG 57806 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| |||||||| || || || || || || || || || | || || ||| || || Sbjct 57805 CTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTATCAATCGT 57746 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || || ||||| || ||||| || || || || || || || | ||| ||||| Sbjct 57745 ATCCGAAGACTCGACTTCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTG 57686 Query 172067 CAT 172069 ||| Sbjct 57685 CAT 57683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905131949516400