Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq136 138 3e-27 seq46 125 2e-23 seq110 96.9 1e-14 seq14 96.9 1e-14 seq63 86.0 2e-11 >seq136 Length=104128 Score = 138 bits (152), Expect = 3e-27 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| |||||||||||||| ||||||||| | ||| || ||||| ||||| || | Sbjct 62952 CTTGACCAAACGACGCTGAATGTAACCAGTTTCGGCTGTCTTGACAGCGGTATCGATCAA 63011 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| | | |||| |||| || |||||||| | |||| || || || | || | Sbjct 63012 ACCTTCTCTACCAGCCATGGCGTGGAAGAAAAACTCTGAAGGAGTAAGACCACGAAGGTA 63071 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 ||| |||| ||||||||||| || |||||||| | || ||| || || |||||||| Sbjct 63072 CGAGTTCTCGACGAAACCACGGGCTTCGGGCGAGTAATCATCCTTTGTGAAATGTGGCAG 63131 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCA 302822 || | || || ||||| | || |||||||| || || || ||||||| || | | Sbjct 63132 TGTGCGGTACTTGAAGCCGAAAGGAATACGCTTGCCTTCGACAATCTGCTGACCGACCAA 63191 Query 302823 CGAAATCATCTGCGAAATATT 302843 | | ||||||| ||||| || Sbjct 63192 GGCAGTCATCTGGGAAATGTT 63212 >seq46 Length=277877 Score = 125 bits (138), Expect = 2e-23 Identities = 287/432 (66%), Gaps = 0/432 (0%) Strand=Plus/Minus Query 133226 ATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTT 133285 ||| | || || || ||||| ||||||||||| ||| || | | || || Sbjct 256588 ATTCTCGCTTTCTTCGCTGCCTCCGATGGTATTGTCAATGAGAACCTCGTCGAGCGCTTC 256529 Query 133286 ATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAA 133345 | || ||||| || | |||| || || ||| || || | ||||| |||||| Sbjct 256528 AGTGGCGAAGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATGATGGAG 256469 Query 133346 AATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAG 133405 || || || || || || || || || || ||||||||||| || || |||| Sbjct 256468 AACATTCACTCCGAGACCTACTCCCTCCTCATCGACACTTACATCAAGGAGCCCTCCCAG 256409 Query 133406 AAGCACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGG 133465 | | | | || |||||||| ||| | | ||||| || || || |||||||| Sbjct 256408 AGGACCTACCTCTTCAACGCTATTGACACCATCCCTTGCATCCGCAAAAAGGCTGACTGG 256349 Query 133466 GCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCT 133525 ||| || ||||| |||||| | | | ||||| |||||||| || |||||| Sbjct 256348 GCTCTTCGCTGGATTACCGACAAGAGCTCCACCTTTGCCCAGCGTCTCGTCGCCTTTGCT 256289 Query 133526 GTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGT 133585 | || ||||| || || ||||| ||||| ||| ||| || || ||||| || ||||| Sbjct 256288 GCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGC 256229 Query 133586 GGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCAC 133645 ||| | | ||||| || ||||| ||||| || || || | || |||| || ||| Sbjct 256228 GGTCTCATGCCTGGCCTTACCTTTTCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCAC 256169 Query 133646 ACCGAATTTGCC 133657 ||||| |||||| Sbjct 256168 ACCGACTTTGCC 256157 >seq110 Length=131535 Score = 96.9 bits (106), Expect = 1e-14 Identities = 216/322 (67%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| |||||||| |||||| ||||||| | | |||| || | || || Sbjct 127818 ACCAATAGCATCAAGTTCGTCGATGAAAACAATTGAGGGAGCCTTGGCCTTGGCGGCGGC 127759 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | || | ||||| ||| |||| ||||| || | ||| |||| || ||| | Sbjct 127758 AAAGAGATCACGAACACGCTTTGCGCCAACGCCAACGTAGACCTCTTCAAACTCGGAACC 127699 Query 289149 GGATAC-TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 ||| | ||||| ||| | || |||||||| || || || | |||| ||| || | Sbjct 127698 GGACATGTTGAA-GAAGGGAACGCCAGCTTCGCCGGCGACAGCACGAGCCAAAAGAGTTT 127640 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 |||| || || || |||||| | | | || ||||| || | || | ||| || | Sbjct 127639 TACCAGTACCGGGGGGTCCCACGAGCAACACGCCCTTGGGGAGCTTGCCGCCAAGAGTCG 127580 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 || ||||||||| | ||||| || | || ||||| ||| || | || ||||||| Sbjct 127579 AGTACTTCTCAGGGTTGCGCAAAAAGTCGATAAGTTCCTGAAGCTCTTCCTTGGCCTCAT 127520 Query 289328 CACATCCTGCTACATCAGCAAA 289349 |||| || ||||||||||| Sbjct 127519 CACAGCCGTGGACATCAGCAAA 127498 >seq14 Length=412804 Score = 96.9 bits (106), Expect = 1e-14 Identities = 128/177 (72%), Gaps = 8/177 (5%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 |||||||| | ||||||||| ||||| ||||||||||||||||| |||||||| || | Sbjct 94579 GCACCGTGAGCAATCATACAGTCACGTTCCATTTCACCGAAACGGAGACCACCGTCTCTG 94638 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACC----GATGGAGCGGCT 251600 || | ||| ||| | ||||||||||| | | || ||||| | ||||| Sbjct 94639 GCACGACCTTCGACGGGCTGACGAGTCATGATCTGCACCGGACCACGAGCACGAGCG--- 94695 Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 || ||| || | ||||||||| | | |||||||||| | | ||||||| ||| Sbjct 94696 -TGGATCTTGTCGTCCACCATATGCCTCAAACGCTGGTAGTACGTAGGACCGAAGAA 94751 Score = 86.0 bits (94), Expect = 2e-11 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 |||||||||||||||||||| ||||||||||||||||| | ||| |||||||| || | Sbjct 94579 GCACCGTGAGCAATCATACAGTCACGTTCCATTTCACCGAAACGGAGACCACCGTCTCTG 94638 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAATT 233391 | | ||| | ||| | |||||||| | | | | | ||||| |||||||| | Sbjct 94639 GCACGACCTTCGACGGGCTGACGAGTCATGATCTGCAC-CGGACCACGAGCACGAGCGTG 94697 Query 233392 AATTTTATCTTTAACCATATGCTTCA 233417 || || || | ||||||||| ||| Sbjct 94698 GATCTTGTCGTCCACCATATGCCTCA 94723 >seq63 Length=219621 Score = 86.0 bits (94), Expect = 2e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 251497 ATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCG 251556 |||| ||||| |||||||| || |||| ||| |||||||| ||||| | | || ||| Sbjct 168925 ATCAAGCAATCGCGCTCCATCTCTCCGAGACGGAGACCACCGTCGCGTGAACGGCCTTCG 168984 Query 251557 GCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTT 251616 | ||||| || ||||| | | ||| ||| ||||| || ||| || | | Sbjct 168985 GTGGGCTGGCGCGTGAGGATGGCGCGAGGGCCGCGCGAGCGCGAGTGCATCTTGTCCTGT 169044 Query 251617 ACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661 ||||| |||||||| ||||||||||| ||| ||| || ||||| Sbjct 169045 ACCATGTGCTTGAGGCGCTGGTAGAAGATGGGGCCGTTGTAGATG 169089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471810848956646