Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq86 168 8e-36 seq46 161 1e-33 seq91 118 1e-20 seq39 111 2e-18 seq64 105 8e-17 >seq86 Length=170212 Score = 168 bits (186), Expect = 8e-36 Identities = 192/258 (74%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| |||||||| || |||| ||| ||||| ||||||||||| |||| |||||||| Sbjct 126654 CTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTTGGA 126595 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||| || || | ||||| ||| | ||| || | ||| | | || Sbjct 126594 TGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGATGTTGAGACC 126535 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| ||||| ||| ||| ||||| | ||||| ||||| || |||||||||||||| Sbjct 126534 GATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTAGATGCCCTC 126475 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| || || |||||||| ||| || || || | || || Sbjct 126474 GATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAGTACC 126415 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 |||||||||||| ||||| Sbjct 126414 GGCGTTGAAGAGGGTGGG 126397 >seq46 Length=277877 Score = 161 bits (178), Expect = 1e-33 Identities = 197/264 (75%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| ||||| ||||| |||||||| ||||||||||||||||| ||||||| | | Sbjct 256197 TCGTTGGAAAAGGTAAGGCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCG 256256 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 ||| || ||| ||||| ||||||||||| |||||| ||| ||| |||| ||||||| Sbjct 256257 AAAGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAG 256316 Query 869321 GTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGAC 869380 ||| || || || | | | ||||| | |||||||| |||||||| | | | Sbjct 256317 GTG--GA-GCTCTTGTCGGTAATCCAGCGAAGAGCCCAGTCAGCCTTTTTGCGGATGCAA 256373 Query 869381 GGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGT 869439 || | ||||| || ||| ||||||| ||||| | | || || ||||||| || || Sbjct 256374 GGGATGGTGTCAATAGCGTTGAAGAGGTAGGTCC-TCTGGGAGGGCTCCTTGATGTAAGT 256432 Query 869440 GTCGATCAGGAGCGAATAGGTCTC 869463 |||||| ||||| || |||||||| Sbjct 256433 GTCGATGAGGAGGGAGTAGGTCTC 256456 Score = 134 bits (148), Expect = 2e-25 Identities = 228/325 (70%), Gaps = 13/325 (4%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| || ||| |||||| |||||||||||||| |||| || || Sbjct 255861 GCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATG 255920 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||| | || | ||||| ||| ||| ||||| | | Sbjct 255921 TTCTCCATGAAGTCGAAGGGGTTAGTCGACCTGTAGATCTTCTCGTTGCCGAGGGCGACA 255980 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC--GA 868868 || || || |||||||| |||||||||||||| ||||||| ||||||||||||| || Sbjct 255981 AGGAGACGATCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGA 256040 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 | |||| | || || | ||| | | ||||| | ||| || |||||| ||||| | Sbjct 256041 AGGGCGCAA--GGGAGGGCCTCAGTGAGGAACTCCTGCTCAATTCTGACGGCATCGACAA 256098 Query 868929 TGATCTGCCTGG----GCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGG 868984 |||| | ||||| || | | | | | ||||||| | | | | |||| ||| Sbjct 256099 TGAT-TTCCTGGATCAGCTGCTTGCTGGGGCGGTTGTTGAGGTG---AGAGAAGAGAAGG 256154 Query 868985 CAGGCAAAGTCGCAGTGCA-ACCCT 869008 |||||||||||| ||| | ||||| Sbjct 256155 CAGGCAAAGTCGGTGTGGAGACCCT 256179 >seq91 Length=163648 Score = 118 bits (130), Expect = 1e-20 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592180 ATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTG 1592239 |||| || ||||||||| | ||||||||||| || || ||| |||| |||||| | || Sbjct 106596 ATCCAGGCTGCCAACTACATGGACATCAAGCCCCTCCTTGATGTTGGATGCAAGACCGTT 106655 Query 1592240 GCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||||||||| || |||||||| || ||||| || || |||| Sbjct 106656 GCCAACATGATCAAGGGCAAGTCCCCTGAGGAGATTCGAAAGACGTTCAATATCA 106710 >seq39 Length=292417 Score = 111 bits (122), Expect = 2e-18 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18090 CACCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCC 18149 || || || ||||||||||||| | | ||||||||||| |||| ||||| || || Sbjct 140796 CAACAGCTATGGCGAGTCGCACTGCAAGTCGGTCGGCTGCATTGTCGATGGCGTTCCTCC 140855 Query 18150 GTGCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCA 18209 ||||| || |||||| ||| |||||||||||| || || | || || || || Sbjct 140856 CGGCATGGAGCTCACCGAGGACGATATCCAGCCTCAGATGACCCGCAGACGTCCCGGACA 140915 Query 18210 GGGCGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGA 18269 | |||| | |||| ||| | ||||| || | |||||||||||||| ||||| || Sbjct 140916 GAGCGCCATCACCACCCCGAGAGACGAGAAGGACAGAGTCATCATCCAGTCCGGCACTGA 140975 Query 18270 GAACGGCCTCACGCTCGGCTCGCC 18293 | |||| |||| ||||| |||| Sbjct 140976 GTTCGGCGTCACTCTCGGAACGCC 140999 Score = 100 bits (110), Expect = 3e-15 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||| || |||||||| || || ||||| ||||||||| || ||| | |||||| Sbjct 141495 GACAGTATTGGCGGCACCGTCACCTGCGTCATTCGCAACGTTCCCAGCGGCTTGGGCGAG 141554 Query 19107 CCGTGCTTT-GACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCAC 19165 || |||||| |||||| |||||||| ||| || ||||||||||| || || || || Sbjct 141555 CC-TGCTTTCGACAAGCTCGAGGCCATGCTGGCGCACGCCATGCTCAGCATTCCCGCGAC 141613 Query 19166 CAAGGGATTCGAGATTGGCAGCGGGTTTG 19194 |||||| |||||| | || ||| |||| Sbjct 141614 CAAGGGCTTCGAGGTCGGTTCCGGTTTTG 141642 Score = 91.5 bits (100), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 || || || || |||||||||| |||||| | | || || ||| ||||||| || ||| Sbjct 141135 CCCCGCCCTTCCCACGCCGACTGGACCTACCTCGAGAAATATGGCGTCAAGGCCTCCTCG 141194 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 || || ||||| || || |||||||||||| || || ||||| || || || ||||| Sbjct 141195 GGTGGCGGCCGCTCTTCCGCCCGCGAGACCATCGGCCGTGTCGCTGCTGGTGCCATCGCC 141254 Query 18478 GAGAA 18482 ||||| Sbjct 141255 GAGAA 141259 >seq64 Length=209228 Score = 105 bits (116), Expect = 8e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 1574057 CCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGC 1574116 ||| || || || || |||||| | | ||||||||||| |||||| || | || |||| Sbjct 199335 CCTCCCCCCAGGTCGGCACAAGATCGTAATCCTCGACGAAGCCGACAGCATGACCTCGGG 199394 Query 1574117 GGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCT 1574176 ||||| || || || || ||| ||||||| || ||||||| |||||||||||| | Sbjct 199395 CGCCCAACAAGCGCTTCGCCGCACAATGGAAATCTACTCCAACACCACGCGCTTTGCCTT 199454 Query 1574177 GGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 || |||||| || | | ||||||| | || ||| |||||||| || ||||| Sbjct 199455 CGCCTGCAACCAATCCAACAAGATCATCGAACCTCTGCAATCCCGCTGCGCAATCCTGCG 199514 Query 1574237 CTT 1574239 ||| Sbjct 199515 CTT 199517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107109820843486