Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq86 129 5e-25 seq18 122 8e-23 seq81 93.3 4e-14 >seq86 Length=170212 Score = 129 bits (142), Expect = 5e-25 Identities = 466/716 (65%), Gaps = 21/716 (3%) Strand=Plus/Minus Query 139303 TCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 |||||||||||||| || | ||||| ||| |||||||| |||| | ||| | | || Sbjct 126914 TCGTACTTTTCGTACAGAGCTTCGAACTCG-TCACCGTAAACGTCGGCAAGGCCAGGGCA 126856 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || || ||| |||||||| | ||| ||||||| || || ||| ||||||| ||||| Sbjct 126855 CTCGTGAGGGCACATGAGAGTCCACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATC 126796 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACG 139481 || ||||| | || | | | |||||| || | |||||| ||| ||| Sbjct 126795 GGGGATCCAGAGGGCAAGGAAGAGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTT--C 126738 Query 139482 TTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539 || | | || |||||| || || || || |||||||| || || || |||||||| | Sbjct 126737 TTGCGGAGGTCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAA 126678 Query 139540 GCGCCTTTCCG---TTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596 || || || |||||||| || || |||| || | | || ||||| || || Sbjct 126677 GCACCAGGACGCTTGTTGCCACCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGG 126618 Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA-CTGTTGCGA 139653 | ||| || | | |||| | | ||| |||||||| | | |||| ||| | || Sbjct 126617 AGCATGGGAACGATACCGTTGGATGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTG--- 126561 Query 139654 GCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA- 139712 || || | | || | |||| ||||| ||||| | | || || || | |||| Sbjct 126560 GCACGAATGCGGTGGATGTTGAGACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAG 126501 Query 139713 ATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCA 139772 || | | || ||||| || || || ||||| |||| ||| |||||| ||||| Sbjct 126500 GTCTTG-AGGGTATCGTAGATGCCCTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCA 126442 Query 139773 TGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA 139832 || || || || || | || ||||| || || || ||| ||||| ||||| Sbjct 126441 CGAAGAGAGCTGGGGCTGGGGAGTACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAA 126382 Query 139833 CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGAT 139892 | | ||||| | | ||| || || ||| | | | ||| || ||| ||| Sbjct 126381 GGTCTTGAGGGACATGAGGTTGTAAGTCTCAATGACCCGCTCAACGTCGTCTCCCCAGAT 126322 Query 139893 ACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttt 139952 |||||||| || ||||| | ||| || ||| || || || | | ||| |||| || Sbjct 126321 ACCGACAGCAACACGCATGATCATGTGCTGGGGACGCTCAGCAATCTGGCCATCGAGCTT 126262 Query 139953 tttCAG--ATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 || || | ||| || ||||||||| |||| ||||| |||||||| || Sbjct 126261 AAGAAGGTATGATCGT--TCGAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTC 126208 >seq18 Length=383124 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||| ||||| ||||| || || ||||| ||||| || || | || Sbjct 57455 ATGCAGATTTTCGTTAAGACGCTTACCGGCAAGACGATTACTCTCGAGGTTGAGTCTTCC 57514 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||||||||||| ||||| || || || || || ||||| Sbjct 57515 GACACCATCGACAACGTAAAGCAAAAGATCCAGGACAAGGAGGGTATCCCACCTGATCAG 57574 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || || || || ||||| |||||| | | | | || || || ||| Sbjct 57575 CAGCGTCTCATTTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCCGACTACAAC 57634 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 ||||| ||||| || || ||||||||| Sbjct 57635 ATTCAGAAGGAGAGCACCCTGCACTTGGTG 57664 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || || || || |||||||| ||||| || | | Sbjct 57683 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATTACGCTGGAAGTCGAGTCTTCG 57742 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||||| ||||| || || || || || || || Sbjct 57743 GATACGATTGATAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 57802 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || ||| |||||||| | | | | || ||||| ||| Sbjct 57803 CAGCGTCTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGGACCCTCTCTGATTACAAC 57862 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| ||||| || || ||||||||| |||| | || || ||| Sbjct 57863 ATTCAGAAGGAGAGCACTCTTCACTTGGTGCTGCGCCTCCGTGGCGGC 57910 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || || || || ||| | || Sbjct 57227 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACCCTTGAGGTGGAATCGTCC 57286 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||||||||| || || || ||||||||||| Sbjct 57287 GACACTATCGACAACGTCAAGCAAAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAG 57346 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || ||||| || ||||| || || | | || || || ||| Sbjct 57347 CAGCGTCTCATTTTCGCCGGCAAGCAGCTTGAAGACGGCCGCACTTTGAGCGACTACAAC 57406 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 ||||| ||||| || || || || Sbjct 57407 ATTCAGAAGGAGTCTACCCTTCA 57429 >seq81 Length=180685 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || ||||| || || || || || | | | Sbjct 25341 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTAGC 25282 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || |||||||| ||||| || || || || || || || Sbjct 25281 GACACCATCGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 25222 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||| |||||| | | | | || || || ||| Sbjct 25221 CAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 25162 Query 24884 ATTCAAAAGGA 24894 || || ||||| Sbjct 25161 ATCCAGAAGGA 25151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895586708240