Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq46 188 1e-41 seq86 150 3e-30 seq64 122 1e-21 seq91 118 2e-20 >seq46 Length=277877 Score = 188 bits (208), Expect = 1e-41 Identities = 228/307 (74%), Gaps = 5/307 (2%) Strand=Plus/Plus Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421 |||||| |||| ||||| |||||||| ||||||||||||||||| ||||||| | Sbjct 256197 TCGTTGGAAAAGGTAAGGCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCG 256256 Query 794422 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAA 794481 ||| || ||| ||||| ||||||||||| |||||| ||||||| |||| |||||| Sbjct 256257 AAAGCACCGCTGAAGAAGATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAG 256316 Query 794482 GTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAG 794541 ||| || || | | | ||||| | ||||| || |||||||| | | | Sbjct 256317 GTG---GAGCTCTTGTCGGTAATCCAGCGAAGAGCCCAGTCAGCCTTTTTGCGGATGCAA 256373 Query 794542 GGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTCTCGACCGGGTCCTTGACGTAGGT 794600 || | ||||| || ||| ||||||| ||||| ||| | || ||||||| ||| || Sbjct 256374 GGGATGGTGTCAATAGCGTTGAAGAGGTAGGTCC-TCTGGGAGGGCTCCTTGATGTAAGT 256432 Query 794601 GTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATA 794660 |||||||||||| ||||||||||| ||||| ||||| || || ||||||||| || || Sbjct 256433 GTCGATGAGGAGGGAGTAGGTCTCGGAGTGAATGTTCTCCATCATGATCTGGAAACCGTA 256492 Query 794661 AAAGCAG 794667 |||||| Sbjct 256493 GAAGCAG 256499 Score = 132 bits (146), Expect = 8e-25 Identities = 187/259 (72%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||||| || ||| |||||| |||||||||||||| ||| Sbjct 255853 TGACACCAGCCTTCTGGTAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGA 255912 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | ||| ||||| | || | |||| ||||||| |||| Sbjct 255913 GAGAAATGTTCTCCATGAAGTCGAAGGGGTTAGTCGACCTGTAGATCTTCTCGTTGCCGA 255972 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | |||| || || ||||||||||| || |||||||| ||||||| ||||||||| Sbjct 255973 GGGCGACAAGGAGACGATCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCA 256032 Query 794071 TGCCGATGAGCGC-CACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||| | || || || ||| || | ||| ||| ||||| | ||| || |||||| Sbjct 256033 TGCCAAGAAGGGCGCAAGGG-AGGGCCTCAGTGAGGAACTCCTGCTCAATTCTGACGGCA 256091 Query 794130 TCGATGATGATCTGCCTGG 794148 |||| ||||| | ||||| Sbjct 256092 TCGACAATGAT-TTCCTGG 256109 >seq86 Length=170212 Score = 150 bits (166), Expect = 3e-30 Identities = 188/258 (73%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || ||||| || |||| ||| ||||| ||||||||||| || | |||||||| Sbjct 126654 CTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTTGGA 126595 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||| || || | ||||| ||| | ||| || | ||| | | || Sbjct 126594 TGTGCCGTTGGTACCAGCGATGTAGGAGCCAGTGGCACGAATGCGGTGGATGTTGAGACC 126535 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| ||||| ||| ||| ||||| | ||||| | || || || |||||||||||||| Sbjct 126534 GATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTAGATGCCCTC 126475 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | ||| |||||||| ||| || || | | || || Sbjct 126474 GATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGAGTACC 126415 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||| |||||||| ||||| Sbjct 126414 GGCGTTGAAGAGGGTGGG 126397 >seq64 Length=209228 Score = 122 bits (134), Expect = 1e-21 Identities = 175/247 (71%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 2019194 CCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGC 2019253 ||| || || || || |||||| | | |||||||| || |||||| || | || |||| Sbjct 199335 CCTCCCCCCAGGTCGGCACAAGATCGTAATCCTCGACGAAGCCGACAGCATGACCTCGGG 199394 Query 2019254 GGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCT 2019313 ||||| || || || || || ||||||| ||| ||||||| ||||| ||||| | Sbjct 199395 CGCCCAACAAGCGCTTCGCCGCACAATGGAAATCTACTCCAACACCACGCGCTTTGCCTT 199454 Query 2019314 GGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCG 2019373 ||||||||| || | | |||||||| | || || ||| ||||| ||| |||| Sbjct 199455 CGCCTGCAACCAATCCAACAAGATCATCGAACCTCTGCAATCCCGCTGCGCAATCCTGCG 199514 Query 2019374 CTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGA 2019433 ||| || ||||||||||| || ||| | || |||| | || ||||| ||||| Sbjct 199515 CTTCGCCAAGCTCACCGACGCGCAAGTCGTCAAACGCCTGCTGCAAATCATCGAAGCCGA 199574 Query 2019434 AAAGGTC 2019440 ||| ||| Sbjct 199575 AAAAGTC 199581 >seq91 Length=163648 Score = 118 bits (130), Expect = 2e-20 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035641 ATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTG 2035700 |||| || ||||||||| | ||||||||||||||||| ||| | || ||||||||||| Sbjct 106596 ATCCAGGCTGCCAACTACATGGACATCAAGCCCCTCCTTGATGTTGGATGCAAGACCGTT 106655 Query 2035701 GCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 |||||| | |||||||||||||| || ||||| || || ||||| || || |||| Sbjct 106656 GCCAACATGATCAAGGGCAAGTCCCCTGAGGAGATTCGAAAGACGTTCAATATCA 106710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916208317907162