Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq86 331 9e-86 seq18 156 4e-33 seq81 129 6e-25 seq43 123 2e-23 seq46 107 2e-18 >seq86 Length=170212 Score = 331 bits (366), Expect = 9e-86 Identities = 1131/1749 (65%), Gaps = 43/1749 (2%) Strand=Plus/Minus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTT---CAATGAGTCGCTTT 148109 |||||| ||| |||||||| || ||||| || || ||||| | ||||| |||| Sbjct 127913 GACTGGGACTGATCAATGAAGGCACCACGATCGGCAGCCATCTTGACAATGGTACGCTGA 127854 Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169 ||||||||| | ||||| || || |||||| | || |||||||| | |||| Sbjct 127853 GAA---ATCTCCCAGACGGTCTTATAGAGAGCCTTGATGTCATTGGGAATGCTTTGGATG 127797 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229 ||| | || |||| | |||| || | || ||| | || | | ||| Sbjct 127796 TTCTGGATAGAACCGCCCTCAGCAATGATGCGGTTCTTCATGGCATCAGACCAAAGGCCC 127737 Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 | ||| | || || || || | | || || ||||| ||||||||||||||||| Sbjct 127736 ATCTCCACAAGATCCCTGAGAAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGCACA 127677 Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349 || || | || | ||| || | || || || ||||||||||||| | |||||| Sbjct 127676 CGTCGTTGGTAGATGTTAGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGA 127617 Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409 | || | || |||||||| || | |||||| |||||| | |||| || || Sbjct 127616 GAAGTGGAAGCAGTGGGCATAGGAGCAAGCAGCAGACTGTTGCGAACACCGTACTTCTTG 127557 Query 148410 ATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCG 148469 || | ||| ||||| | |||||||||||| | || || ||||||||||||||| Sbjct 127556 ATGTCCGCCTTGAGAGCAGTCCAGTCCCAGAGGTTGGTAGGGGTGACGTTCCACATGTCG 127497 Query 148470 TACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCC 148529 || || || || || || |||| ||| ||||| | | |||||| || ||| || Sbjct 127496 TATTGGAGGATTCCCTGGGAGACGGGCGAGCCTTCGTAGGTGGCGTACGGGCCCTGCTCC 127437 Query 148530 GCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTG 148589 || || | ||| || || ||| ||| ||| || |||||| ||| || || Sbjct 127436 TTGGCGAGCTGGCAAGAGGCAGTAAGAGCGGCGTGGTAGATGGTCTCGAAAATCTGGATG 127377 Query 148590 TTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCA 148649 |||||| |||| || ||| | ||||| || || || || || || ||| Sbjct 127376 TTGAGCTTGCTAGCCGCGTCAGAATCGAAGGGCATGCGGAGAGCCAAGAAAGCATCAGCA 127317 Query 148650 AGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG 148709 || ||||| || || || |||||||| ||||| |||||| | | | || || Sbjct 127316 AGACCCTGAACACCGACACCAATGGGACGGTGACGCATGTTGCTGTTGTGGGCCTCCTTA 127257 Query 148710 AGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATT 148769 | || ||||||||| ||| |||||||||| || ||||| || || || | || | Sbjct 127256 ACGGGGTAGTGGTTGATGTCAATGATCTTGTTGAGGTTGCGGACGACGACTTGAGTGACC 127197 Query 148770 CTGCGCAGCAATTCAAAATCGTA------CTTGTCATCTACGATGCATCGGTTCACGGCG 148823 | ||||| | || ||||| || || | |||| | | | |||| Sbjct 127196 TCGTGCAGCTTCTTGAAGTCGTAAGAGGCATTCTCGTAGTCGATAAAGGCGGAAAGGGCG 127137 Query 148824 ATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCG 148883 | |||||| || ||||| ||||| ||||||||| || |||||| | ||||| | | Sbjct 127136 AGAGAGGCAAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTCAGTG 127077 Query 148884 CACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCG 148943 ||||| ||| || ||| |||| |||||| || || ||||||| |||||| || Sbjct 127076 CACAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGGCA 127017 Query 148944 TCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AACCGA 149000 |||||||| |||||| | || ||| || || ||| | || | ||| ||| | Sbjct 127016 TCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATACCAA 126957 Query 149001 TGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCC------TCCTGCTCGTA--TA 149052 || | ||| || |||| | || | ||||||| |||| ||||| | Sbjct 126956 ---AGCTTCTGGGC-----CTTGACGGTC-TTGCGACCCTTGCCTTCCTTTTCGTACTTT 126906 Query 149053 AAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCG 149112 ||| | ||| |||||| | || ||||| ||| | || || ||||||| ||| | Sbjct 126905 TCGTACAGAGC--TTCGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAG 126848 Query 149113 GGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCC 149172 |||||||||| | |||| ||||| | | || |||||||| || |||||||| | || Sbjct 126847 GGCACATGAGAGTCCACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCC 126788 Query 149173 AGAGCGCGTACATGAGGTCGCGCGCCTTGCA-GTCTTCGGCGCCCATGTTGCGGCGCAGG 149231 |||| || | ||| ||||| | | ||| ||||| || ||| ||| ||| Sbjct 126787 AGAGGGCAAGGAAGAGATCGCGAG-CGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGG 126729 Query 149232 TTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTG 149291 | || | ||| | || |||||||| ||||| | ||| | |||| || || Sbjct 126728 TCAAGGAACTCGAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACCAGGA 126669 Query 149292 CGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGT 149348 ||| ||||| |||||||| |||| ||| | ||||||| || || || | ||| || Sbjct 126668 CGCTTGTTGCCACCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGA 126609 Query 149349 TCAATGCCACTGGCAGTGCCGTTAGTA-GAGCTAATGCGACTGCCGCGCGCTCGCACTTT 149407 | || || ||| |||||||| ||| ||| ||| ||| || || | Sbjct 126608 ACGATACCGTTGGATGTGCCGTTGGTACCAGC-GATGTAGGAGCCAGTGGCACGAATGCG 126550 Query 149408 GTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCG 149466 ||| | ||||| ||||| ||||| ||| | ||| ||||| |||||| ||| | Sbjct 126549 GTGGATGTTGAGACCGATACCGCCAGCCAT-CTTAGAGATCATGGCGCAGGTCTTGAGGG 126491 Query 149467 TCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTT 149526 | ||||||||||||||| ||||| ||||||| | ||| |||||||| | | | Sbjct 126490 TATCGTAGATGCCCTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCT 126431 Query 149527 GCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGC 149586 | || | || ||||| ||| | |||||| ||||| || || || || Sbjct 126430 GGGGCTGGGGAGTACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAAGGTCTTGAGGG 126371 Query 149587 TCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGA 149646 ||| | | ||| | ||| | || || || | ||| || || ||| || | || | Sbjct 126370 ACATGAGGTTGTAAGTCTCAATGACCCGCTCAACGTCGTCTCCCCAGATACCGACAGCAA 126311 Query 149647 CGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGC 149706 | ||||| | ||| ||||| || ||||| || | | | | | || || | ||| Sbjct 126310 CACGCATGATCATGTGCTGGGGACGCTCAGCAATCTGGCCATCGAGCTTAAGAAGGTATG 126251 Query 149707 CGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATGG 149766 ||| || |||||| |||| ||||| | ||||| ||||| ||| ||| | |||| | Sbjct 126250 ATCGTTCGAGGGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCACGGTCGTAGACAATTG 126191 Query 149767 CGGCGTCGA 149775 | | ||||| Sbjct 126190 CCGAGTCGA 126182 >seq18 Length=383124 Score = 156 bits (172), Expect = 4e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||| ||||| || ||||| |||| || ||| ||| || ||||| Sbjct 57430 ATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCTTCAAGCTG 57371 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| ||| ||||||| |||||||| |||||||| ||||| |||||||| |||||| Sbjct 57370 CTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTT 57311 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 |||||||| | || | ||||||| | ||||| || | ||||| ||| |||||||| Sbjct 57310 TTGCTTGACGTTGTCGATAGTGTCGGACGATTCCACCTCAAGGGTGATGGTCTTGCCGGT 57251 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || ||||| || ||||| Sbjct 57250 AAGAGTCTTGACGAAGATTTGCAT 57227 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||| ||| ||||| || ||||| ||| | ||| ||| | |||||||| Sbjct 57660 AAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCA-TCCTCGAG 57602 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| ||||||| |||||||| || || ||||| || |||||||| ||| Sbjct 57601 CTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGGAT 57542 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||||||||| | | || | ||||||| | ||| || |||| || | || ||||| Sbjct 57541 CTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTAATCGTCTTGCC 57482 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || || || |||||||||||||| Sbjct 57481 GGTAAGCGTCTTAACGAAAATCTGCAT 57455 Score = 109 bits (120), Expect = 5e-19 Identities = 132/177 (75%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| | ||| | | | ||||| | |||||||| Sbjct 57196 GGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCA-TCCTCCAACTGCTTGC 57138 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || |||| | |||||||||||||| || ||||| |||||||| |||||||||| Sbjct 57137 CGGCAAAAATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTTTGCT 57078 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 ||| | |||| || || | | ||| || |||| ||||| ||| |||||||||| Sbjct 57077 TGACATTGTCAATGGTATCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCA 57021 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| | |||||| || || | || || ||||||||||| || ||||| || |||||| Sbjct 57837 TCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTG 57778 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||||||||| | | |||| ||| || | | ||| || || | || | Sbjct 57777 TCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGACTTCCAGCGTAATC 57718 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| || || |||||||||||||| Sbjct 57717 GTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 >seq81 Length=180685 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||| ||| ||||| || ||||| ||| | ||| | | | ||||| |||||||||| Sbjct 25144 GGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCAAGCTGCTTGC 25202 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || ||||||||||| || |||||||| |||||||| |||||| |||| Sbjct 25203 CGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCT 25262 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | |||||| | | |||||| || | ||||| || ||||| || || | Sbjct 25263 TGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGG 25322 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 25323 TCTTCACGAAGATCTGCATG 25342 >seq43 Length=285406 Score = 123 bits (136), Expect = 2e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| || |||| || |||||||||||||| ||||| || |||||| Sbjct 263409 TCCTCGAGCTGCTTGCCAGCAAAAATCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTG 263468 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||| ||||||| | |||| |||||||| || ||| || |||| |||| | Sbjct 263469 TCCTGAATCTTCTGCTTGACATTGTCAATCGTGTCGGAGGACTCAACCTCGAGCGTGATG 263528 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651 || ||||| || || || || ||||| Sbjct 263529 GTCTTGCCCGTGAGGGTCTTGACGAA 263554 >seq46 Length=277877 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| |||||||| ||||| || ||||| || || || || ||||||||| ||| || Sbjct 256152 AGGCAGGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAAAAGGTA 256211 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGC-AAAGCTGCCCGAAAA 120758 ||||| ||||||| || | |||||| |||| |||| ||| ||||| | | || Sbjct 256212 AGGCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAA- 256270 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | ||||| ||| ||||||||||| | |||| ||| || || | ||||| Sbjct 256271 GAAGATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAGGTGGAGCTCTTGTC 256330 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 | ||||| | ||||| || ||||||||||| | ||| || || Sbjct 256331 GGTAATCCAGCGAAGAGCCCAGTCAGCCTTTTTGCGGATGCAAGGGAT 256378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483418636691920