Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq18 102 2e-16 >seq18 Length=383124 Score = 102 bits (112), Expect = 2e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || || || || || || ||||| | || |||||| || ||||| |||| Sbjct 57241 CAAGACTCTTACCGGCAAGACCATCACCCTTGAGGTGGAATCGTCCGACACTATCGACAA 57300 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||||| ||||| || || || ||| || || || | || || || Sbjct 57301 CGTCAAGCAAAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAGCAGCGTCTCATTTT 57360 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| | ||||| || | |||||| ||| |||||| | ||||| ||||| Sbjct 57361 CGCCGGCAAGCAGCTTGAAGACGGCCGCACTTTGAGCGACTACAACATTCAGAAGGAGTC 57420 Query 206364 TACTCTTCACCTTGTT 206379 ||| ||||| || ||| Sbjct 57421 TACCCTTCATCTCGTT 57436 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || |||||||||||||| || || || || ||| || ||| || | | || || Sbjct 57074 GTCAAGCAAAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATTTTT 57133 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||||||||| ||||| | || | |||| |||||| ||||||| |||||| Sbjct 57134 GCCGGCAAGCAGTTGGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCT 57193 Query 206365 ACTCTTCACCTTGT 206378 || || |||||||| Sbjct 57194 ACCCTCCACCTTGT 57207 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || || || ||||| || ||||||| || ||| || Sbjct 57686 CAGATTTTCGTCAAGACCTTGACGGGCAAGACGATTACGCTGGAAGTCGAGTCTTCGGAT 57745 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||||||||||| || || || || || || ||| ||| || Sbjct 57746 ACGATTGATAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAGCAG 57805 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || ||||||||||| ||||| |||| | | ||||||||| | Sbjct 57806 CGTCTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGGACCCTCTCTGATTACAACATT 57865 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||| ||||||||| Sbjct 57866 CAGAAGGAGAGCACTCTTCAC 57886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181815379135718