Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq18 98.7 9e-16 seq46 82.4 7e-11 >seq18 Length=383124 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| || | ||||| | || || ||| | | Sbjct 57227 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACCCTTGAGGTGGAATCGTCC 57286 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || || ||||| || || || ||||| || || ||||||||| Sbjct 57287 GACACTATCGACAACGTCAAGCAAAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAG 57346 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | ||||||| || |||||| || || ||||| | | | | | ||||| ||||| Sbjct 57347 CAGCGTCTCATTTTCGCCGGCAAGCAGCTTGAAGACGGCCGCACTTTGAGCGACTACAAC 57406 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 ||||| || || || ||| ||||| Sbjct 57407 ATTCAGAAGGAGTCTACCCTTCAT 57430 >seq46 Length=277877 Score = 82.4 bits (90), Expect = 7e-11 Identities = 128/182 (70%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771 |||||| || || | || || || | |||| ||||||||| || ||||||| ||| Sbjct 256534 GCTCGACGAGGTTCTCATTGACAATACCATCGGAGGCAGCGAAGAAAGCGAGAATGTGGG 256593 Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831 | ||||| || | |||||||| | ||||||||||| | || ||||||||| | Sbjct 256594 AGATGAAGAACTTCTCGTCGTCGTTCAACCTGTTGTTCCAGTCGTGAAGGTCCTTGGAGA 256653 Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAAGAT 110891 || ||||| ||| | ||||| || | | |||||||||||| ||||| |||| Sbjct 256654 GATCAATCTCCTCGGCGGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATTTGCC--AGAT 256711 Query 110892 CT 110893 || Sbjct 256712 CT 256713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445092408202560