Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq46 244 2e-58 seq86 145 1e-28 seq64 111 2e-18 >seq46 Length=277877 Score = 244 bits (270), Expect = 2e-58 Identities = 374/522 (72%), Gaps = 11/522 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||||||||| ||||| ||||||||||||||| | || | Sbjct 256712 GATCTGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATTGATC 256654 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 || | ||| | ||||| | ||| |||||||||| |||||| Sbjct 256653 TCTCCAAGGACCTTCACGACTGGAACAACAGGTTGAACGACGACGAGAAGTTCTTCATCT 256594 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| | ||||| ||| ||||| ||| |||||| || || |||||||| | || Sbjct 256593 CCCACATTCTCGC-TTTCTTCGCTGCCTCCGATGGTATTGTCAATGAGAACCTCGTCGAG 256535 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | || ||||| | || ||||| || | || ||||| ||||||||| Sbjct 256534 CGCTTCAGTGGCGAAGTCCAGATCCCCGAGGCTCGCTGCTTCTACGGTTTCCAGATCATG 256475 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || ||||| ||||| || |||||||| ||||| |||||||| ||| ||||||| || Sbjct 256474 ATGGAGAACATTCACTCCGAGACCTACTCCCTCCTCATCGACACTTACATCAAGGAGCCC 256415 Query 1456072 GTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | ||| ||||| ||||||| ||| || ||||| | || | | | |||||||| Sbjct 256414 TCCCAGA-GGACCTACCTCTTCAACGCTATTGACACCATCCCTTGCATCCGCAAAAAGGC 256356 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTC 1456190 |||||||| | ||||| | | | || || || || ||||||| |||| |||||| Sbjct 256355 TGACTGGGCTCTTCGCTGGATTACCGACAAGAGC-TCCAC-CTTTGCCCAGCGTCTCGTC 256298 Query 1456191 GGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | |||||| || |||||||| ||||| ||| || |||| | ||||||| |||||| Sbjct 256297 GCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCTTTCGCCTCCATCTTCTGGCTC 256238 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGA 1456291 ||||||||||| |||||||| || ||| |||| |||||| Sbjct 256237 AAGAAGCGCGGTCTCATGCCTGGCCTT-ACCTTTTCCAACGA 256197 Score = 111 bits (122), Expect = 2e-18 Identities = 182/255 (71%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||| ||||| |||||| || ||| | ||||| ||| ||| | || || | ||| Sbjct 256102 ATCATTGTCGATGCCGTCAGAATTGAGCAGGAGTTCCTCACTGAGGCCCTCCC--TTGCG 256045 Query 1456583 CTCATC--GGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 | | || |||||||||||| | |||||| |||||||| || || |||||||| || Sbjct 256044 CCCTTCTTGGCATGAACGCCGAC-CTCATGAAGCAGTACATCGAGTTC-GTCGCCGATCG 255987 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 || || | || |||||| || ||||| |||| || || | ||||| ||| | | Sbjct 255986 TCTCCTTGTCGCCCTCGGCAACG-AGAAGATCTACAGGTCGACTAACCCCTTCGACTTCA 255928 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACG 1456759 ||||| || || |||| |||||||||||||| |||||| || | |||||| ||| Sbjct 255927 TGGAGAACATTTCTCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGCGACTACC 255868 Query 1456760 CCAAGGCCGGCGTCA 1456774 ||||| || |||| Sbjct 255867 AGAAGGCTGGTGTCA 255853 >seq86 Length=170212 Score = 145 bits (160), Expect = 1e-28 Identities = 187/258 (72%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||| ||||| || ||||| || || | || ||| || |||||||| ||| | ||| Sbjct 126397 CCCACCCTCTTCAACGCCGGTACTCCCCAGCCCCAGCTCTCTTCGTGCTTCCTGGTCGAC 126456 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| || |||||||||||||| || || |||||| ||||| | ||||| Sbjct 126457 ATGAAGGAAGACAGTATCGAGGGCATCTACGATACCCTCAAGACCTGCGCCATGATCTCT 126516 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| ||||| |||||| | | ||| | || ||| | ||| ||||| | Sbjct 126517 AAGATGGCTGGCGGTATCGGTCTCAACATCCACCGCATTCGTGCCACTGGCTCCTACATC 126576 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || ||||||||| |||||||| | || |||||||| || || || ||| |||| Sbjct 126577 GCTGGTACCAACGGCACATCCAACGGTATCGTTCCCATGCTCCGTGTCTTCAACAACACC 126636 Query 260165 GCGCGCTACGTCGACCAG 260182 || |||||||| |||||| Sbjct 126637 GCCCGCTACGTTGACCAG 126654 Score = 91.5 bits (100), Expect = 2e-12 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| ||||| ||| |||||| | ||||| |||| |||| |||| |||||||||| Sbjct 126958 TGGTATGCCATCCTCGAGGCCCAGACTGAGACGGGCAACCCCTTCATGCTCTACAAGGAT 127017 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA-CGACAGAGGCCAACCTGTG 262215 ||| ||||| | || |||||| |||||||||| |||| | ||| |||||||||| Sbjct 127018 GCCTGCAACCGCAAGAGTAACCAGAAGAACCTGGGTACCATCCGCAGCT-CCAACCTGTG 127076 Query 262216 CACCGAGATCGTCCAGT 262232 ||| ||||| || ||| Sbjct 127077 CACTGAGATTATCGAGT 127093 >seq64 Length=209228 Score = 111 bits (122), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACCGGCGATTTGGGCGTCAGTGAGGCGC 332869 || |||||||| ||| || | ||||||| | ||| ||| ||||| ||||| Sbjct 199580 ACTTTTTCGGCTTCGATGATTTGCAGCAGGCGTTTGACGACTTGCGCGTCGGTGAGCTTG 199521 Query 332870 ACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTG 332929 | ||||||||||| || || ||| ||||| | ||||||| | | || |||| Sbjct 199520 GCGAAGCGCAGGATTGCGCAGCGGGATTGCAGAGGTTCGATGATCTTGTTGGATTGGTTG 199461 Query 332930 CAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGT 332989 ||||| | |||||| ||||| || |||| | ||||||| || || || || ||| Sbjct 199460 CAGGCGAAGGCAAAGCGCGTGGTGTTGGAGTAGATTTCCATTGTGCGGCGAAGCGCTTGT 199401 Query 332990 TGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCC 333045 ||||| ||| || | || |||||| ||||||||||| | ||||||||| || || Sbjct 199400 TGGGCGCCCGAGGTCATGCTGTCGGCTTCGTCGAGGATTACGATCTTGTGCCGACC 199345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177776670241996