Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq18 143 2e-29 seq81 131 2e-25 seq43 96.9 3e-15 >seq18 Length=383124 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | || |||||| || | || |||||||| |||||||||||||| | Sbjct 57909 CCGCCACGGAGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAG 57850 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || |||| ||||||||| ||||| |||| ||||||||||| | || Sbjct 57849 AGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 57790 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||||||||||| | | | ||| || || || || Sbjct 57789 ATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGACT 57730 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| ||||| || |||||||| || || || || |||||||| Sbjct 57729 TCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Score = 125 bits (138), Expect = 6e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| ||| ||| || || |||| || |||||||| || || || Sbjct 57418 CTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCTTCAAGCTGCTTGCCGGCGAA 57359 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | |||||||| || | ||||| || ||||||||| |||||||||||| | || Sbjct 57358 AATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTTTGCTTGAC-GT 57300 Query 35665 TGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| |||||||||||| | ||||| || || || || | ||| || | Sbjct 57299 TGTCGATAGTGTCGGACGATTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGA 57240 Query 35724 CAAATATCTGCAT 35736 | || || ||||| Sbjct 57239 CGAAGATTTGCAT 57227 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || |||||||| ||||||||||| |||| Sbjct 57681 CCACCACGAAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAG 57622 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || || || || | |||||||| || | || Sbjct 57621 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGG 57562 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| |||||||||||| | |||| | | |||||| || || || Sbjct 57561 ATACCCTCCTTGTCCTGGATCTTTTGCTTTA-CGTTGTCGATGGTGTCGGAAGACTCAAC 57503 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | || ||||| || || || | || || || || |||||||| Sbjct 57502 CTCGAGAGTAATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || |||| |||||| || ||||| Sbjct 57190 CTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCCAACTGCTTGCCGGCAAA 57131 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | |||| || |||||||||| ||||||||||| | | | Sbjct 57130 AATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGAATCTTTTGCTTGACATT 57071 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 | | || || ||| || ||||| | ||||| || || || |||| Sbjct 57070 GTCAATGGTATCCGACGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCA 57021 >seq81 Length=180685 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 || |||||||| || |||||||| |||| | ||| || | || || |||||||| || Sbjct 25145 GTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 25204 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || |||| ||||||||||| | || | || |||||||||| |||||| ||||| Sbjct 25205 GCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTG 25264 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | |||||||| || |||||||| | ||||| || || ||||| | || Sbjct 25265 ACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTC 25324 Query 35720 TTCACAAATATCTGCAT 35736 ||||| || |||||||| Sbjct 25325 TTCACGAAGATCTGCAT 25341 >seq43 Length=285406 Score = 96.9 bits (106), Expect = 3e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| | ||| || | || || |||||||| || ||||| | Sbjct 263374 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAA 263433 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||| | || | | |||||||||| ||||| ||||| | | | Sbjct 263434 TCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTGACATTGT 263493 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | ||||||| || || ||||| | |||||| || || ||||| Sbjct 263494 CAATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGT 263539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450791582698640