Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq18 170 2e-37 seq43 120 3e-22 seq81 107 2e-18 >seq18 Length=383124 Score = 170 bits (188), Expect = 2e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || || || ||||| |||||||||||||||| | ||| | ||| || Sbjct 57435 ACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCTTCA 57376 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || ||||| | ||||||||||||||| || ||||| || || ||||| Sbjct 57375 AGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCTTGG 57316 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || ||||| ||||| ||| | ||||||||||||||||| || || || ||||| || Sbjct 57315 ATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCACCTCAAGGGTGATGGTCTTG 57256 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| | ||| || ||||| |||||||| Sbjct 57255 CCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 Score = 141 bits (156), Expect = 9e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || ||| ||||| ||||||||||||||| | |||| || Sbjct 57672 AGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGA 57613 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || |||||||| || || || ||||| | |||||||||||| || || || || || Sbjct 57612 CCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGGATACCCTCC 57553 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || ||||| || || ||| | |||||||| || || || ||||||||| Sbjct 57552 TTGTCCTGGATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTA 57493 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| | || ||||||||||| ||||| Sbjct 57492 ATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 Score = 131 bits (144), Expect = 2e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || || || ||||| || |||||||||||| || |||| | || || Sbjct 57207 ACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCC 57148 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 | ||| ||||| ||||||||||| |||||||| ||||| || ||||| || || || ||| Sbjct 57147 AACTGCTTGCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGA 57088 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || ||||| ||||| ||| | || || ||||| || || ||||| || ||||| || Sbjct 57087 ATCTTTTGCTTGACATTGTCAATGGTATCCGACGACTCGACCTCGAGGGTGATGGTCTTG 57028 Query 134685 CCGGT 134689 ||||| Sbjct 57027 CCGGT 57023 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||| ||| | ||| || ||| ||||| ||||||||||| || Sbjct 57909 CCGCCACGGAGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAG 57850 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || | ||| || || ||||| |||| ||||||||| || ||||| Sbjct 57849 AGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGG 57790 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || ||||| || || || | || || || || || || Sbjct 57789 ATACCCTCCTTGTCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGACT 57730 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || || || || || || || |||||||| ||||| Sbjct 57729 TCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 >seq43 Length=285406 Score = 120 bits (132), Expect = 3e-22 Identities = 135/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| | |||| | || |||||||| ||||| ||||||| Sbjct 263374 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAA 263433 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| |||||||| || || || || || ||||| || || ||||| || Sbjct 263434 TCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTGACATTGT 263493 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | |||||||| || || || ||||| || ||||| || || || | || || |||| Sbjct 263494 CAATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 263553 Query 134704 A 134704 | Sbjct 263554 A 263554 >seq81 Length=180685 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||||||| || ||| ||||| || |||||||||||| Sbjct 25115 CCACCACGGAGGCGAAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 25174 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || |||| |||||||| || || || Sbjct 25175 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGG 25234 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || ||||| ||| | |||||| || ||||| Sbjct 25235 ATGCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCGATGGTGTCGCTAGACTCCACC 25294 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || | || || ||||| || ||||| Sbjct 25295 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 25341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396138342160