Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq18 132 4e-26 >seq18 Length=383124 Score = 132 bits (146), Expect = 4e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || ||||| ||||||||||||| |||| ||||||| ||||| || ||| Sbjct 57423 GTAGACTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCTTCAAGCTGCTTGCCG 57364 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| ||||||||||||| ||||| || || | ||||| || || |||||| | || Sbjct 57363 GCGAAAATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCTTGGATCTTTTGCTTG 57304 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | |||||| | | ||| || || || || || | ||||| || ||||| Sbjct 57303 ACGTTGTCGATAGTGTCGGACGATTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGAGTC 57244 Query 27231 TTCACAAAGATTTGCATA 27248 || || |||||||||||| Sbjct 57243 TTGACGAAGATTTGCATA 57226 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || ||||| ||||||||| | | |||| | || |||||||| || || ||| || Sbjct 57645 TCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAA 57586 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 ||||||||||| ||||| || || | |||||| || || |||||| | || | | | Sbjct 57585 ATGAGACGCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGGATCTTTTGCTTTACGTTG 57526 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| | | ||||| || ||||| || | ||||| || || || || || Sbjct 57525 TCGATGGTGTCGGAAGACTCAACCTCGAGAGTAATCGTCTTGCCGGTAAGCGTCTTAACG 57466 Query 27237 AAGATTTGCATA 27248 || || |||||| Sbjct 57465 AAAATCTGCATA 57454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424932545958096