Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq46 127 7e-24 seq86 87.8 6e-12 >seq46 Length=277877 Score = 127 bits (140), Expect = 7e-24 Identities = 363/544 (67%), Gaps = 23/544 (4%) Strand=Plus/Minus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTA 443396 || |||||| |||||||||||||||||||||||| | ||| |||||| | | | Sbjct 256678 TTCTGGACCGCCGAGGAGATTGATCTCTCCAAGGACCTTCACGACTGGAACAACAGGTTG 256619 Query 443397 TCTAGCCATGAACGCGAT-TTCTTCAAATGC---ATCTTGGCCTTCTTTGCACCGAGCGA 443452 | | | || || || ||||||| | | || | || ||||| || | ||| Sbjct 256618 ---AACGACGA-CGAGAAGTTCTTCATCTCCCACATTCTCGCTTTCTTCGCTGCCTCCGA 256563 Query 443453 CGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTA---CGAAATGGTAGTGTACACCGA 443509 ||||| ||| |||||| || || ||| ||| |||| || | | |||| Sbjct 256562 TGGTATTGTCAATGAGAACCTCGTCGAGCGCTTCAGTGGCGAA---GTCCAGATCCCCGA 256506 Query 443510 GGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAG 443569 ||| |||| |||||||| ||||| | ||||||||||||||| ||||| |||| Sbjct 256505 GGCTCGCTGCTTCTACGGTTTCCAGATCATGATGGAGAACATTCACTCCGAGACCTACTC 256446 Query 443570 TCAGTTGATCAAGACACTAATTCCGAACGAAGACGAACAGCGGTCCATCTTCT-CATCGT 443628 | | ||| |||||| | | || || | ||| || || | ||| || || Sbjct 256445 CCTCCTCATC--GACACTTACATC-AAGGAGCCCTCCCAGAGGACCTACCTCTTCAACGC 256389 Query 443629 TCATGAC--CACGCCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACG 443686 | |||| || || ||||| ||||| || |||||| | ||| | | || Sbjct 256388 TATTGACACCATCCCTTGCATCCGCAAAAAGGCTGACTGGGCTCTTCGCTGGATT-ACCG 256330 Query 443687 AGAAAATCTC-AGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGT 443745 | || | ||| | ||| | | |||| || ||||| ||||||| ||||| || | || | Sbjct 256329 ACAAGAGCTCCACCTTTGCCCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCT 256270 Query 443746 TTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTG 443805 | ||||| ||||| ||||||||||||||| | || ||||| || || |||| || || Sbjct 256269 TCAGCGGT-GCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCTT 256211 Query 443806 ACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTT 443865 |||||| ||||| || ||| || || |||||| | || |||||| ||||| ||| Sbjct 256210 ACCTTTTCCAACGAGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGCCTGCCTT 256151 Query 443866 CTCT 443869 |||| Sbjct 256150 CTCT 256147 >seq86 Length=170212 Score = 87.8 bits (96), Expect = 6e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| ||||||| ||||||||| || |||||||| || || || ||| ||| || Sbjct 126610 CCCATGCTCCGTGTCTTCAACAACACCGCCCGCTACGTTGACCAGGGTGGCAACAAGCGT 126669 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA 255081 || || || ||| |||||||||| ||||| ||||||||||| Sbjct 126670 CCTGGTGCTTTCGCCATCTACCTCGAGCCTTGGCACGCCGA 126710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588328714501310