Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq86 306 5e-78 seq46 93.3 5e-14 seq62 87.8 2e-12 seq165 86.0 8e-12 >seq86 Length=170212 Score = 306 bits (338), Expect = 5e-78 Identities = 1025/1583 (65%), Gaps = 43/1583 (3%) Strand=Plus/Minus Query 110524 AATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTG 110583 ||| ||||| || || ||||||| |||||| |||| || || | ||| ||||| Sbjct 127851 AATCTCCCAGACGGTCTTATAGAGAGCCTTGATGTCATTGGGAATGCTTTGGATGTTCTG 127792 Query 110584 GATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTT 110643 ||| ||||| ||| | | ||| | | |||||| | | ||||| || || |||| Sbjct 127791 GATAGAACCGCCCTCAGCAATGATGCGGTTCTTCATGGCATCAGACCAAAGGCCCATCTC 127732 Query 110644 CTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCT 110703 | || || ||| || |||||| | ||||| || ||||| | || Sbjct 127731 CACAAGATCCCTGAGAAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGCACACGTCG 127672 Query 110704 CAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGT 110763 |||||||||| | ||||| || || ||||| || || || || | || || | || Sbjct 127671 TTGGTAGATGTTAGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGAGAAGT 127612 Query 110764 GGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCG 110823 ||| || || ||||| || || | || |||||||| |||| ||| | || ||||||| Sbjct 127611 GGAAGCAGTGGGCATAGGAGCAAGCAGCAGACTGTTGCGAACACCGTACTTCTTGATGTC 127552 Query 110824 TTCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTT----TCACCTTCCCACATGTCAA 110879 |||||||| || |||||| || || ||||| | || |||| ||||||| Sbjct 127551 CGCCTTGAGAGCAGTCCAGTCCCAG---AGGTTGGTAGGGGTGACGTTCC-ACATGTCGT 127496 Query 110880 ACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTT 110939 | || || | || ||||| |||| || || || |||| | || | || || | | Sbjct 127495 ATTGGAGGATTCCCTGGGAGACGGGCGAGCCTTCGTAGGTGGCGTACGGGCCCTGCTCCT 127436 Query 110940 CAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 110999 || | | || || || | ||||| || ||||| || || || | | Sbjct 127435 TGGCGAGCTGGCAAGAGGCAGTAAGAGCGGCGTGGTAGATGGTCTCGAAAATCTGGATGT 127376 Query 111000 TCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAAAATAAATACATC 111054 | | || | || | || ||||| || |||| || | || ||| |||| Sbjct 127375 TGAGCTTGCTAGCCGCGTCAGAATCGAAGGGCATGCGGAGAGCCAAGAAAG-----CATC 127321 Query 111055 CGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGT 111114 || ||||| |||||||| | |||||| || | ||| ||||| || || | || Sbjct 127320 AGCAAGACCCTGAACACCGACACCAATGGGACGGTGACGCATGTTGCTGTTGTGGGCCTC 127261 Query 111115 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 || |||||| || || ||||||||| ||| || || | || | | || Sbjct 127260 CTTAACGGGGTAGTGGTTGATGTCAATGATCTTGTTGAGGTTGCGGACGACGACTTGAGT 127201 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 111234 || || || || || | | || ||| | | |||| | | || | | | ||| Sbjct 127200 GACCTCGTGCAGCTTCTTGAAGTCGTAAGAGGCATTCTCGTAGTCGATAAAGGCGGAAAG 127141 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 ||||| || || | |||||||| || ||||||| | | | |||||| | ||| || Sbjct 127140 GGCGAGAGAGGCAAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTC 127081 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 || || | |||||| || || || |||| ||||| ||||||||||| |||||| Sbjct 127080 AGTGCACAGGTTGGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCA 127021 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 |||||||||||||||||| |||| | |||||||| ||||| | | ||| || || | Sbjct 127020 GGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATA 126961 Query 111415 CCAAA-CATCGGCGGCTGGTACAATGGCGTTG-GCCCGT--CCCTCCGCCTCGTACTTTG 111470 ||||| | || | | || | | || ||| | || | || ||| ||||||||| Sbjct 126960 CCAAAGCTTCTGGGCCTTG----ACGGTCTTGCGACCCTTGCCTTCCTTTTCGTACTTTT 126905 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGAC 111530 ||| || ||||| ||||| ||||| |||||| || || || || || || | Sbjct 126904 CGTACAGAGCTTCGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGC 126845 Query 111531 AGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | | |||| ||| || || | |||||| |||||||||||||| || || ||||| | Sbjct 126844 ACATGAGAGTCCACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGA 126785 Query 111591 GGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAA 111650 ||| |||||||| | | || ||||||| | ||| ||||| || | |||| Sbjct 126784 GGGCAAGGAAGAGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAA 126725 Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC 111710 ||||||| | || ||| |||||||| ||||| || |||| |||| || || ||| Sbjct 126724 GGAACTCGAAGACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACC---AGGAC 126668 Query 111711 GC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 111764 || ||| | || | || ||||| || ||| ||| || || || ||||| |||| Sbjct 126667 GCTTGTTGCCACCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAA 126608 Query 111765 TAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATC 111822 ||||| | ||| || || || || ||| || ||| | |||| | | Sbjct 126607 CGATACCGTTGGATGTGCCGTTGGTACCAGCGATGTAGGAG--CCAGTGGCACGAATGCG 126550 Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882 ||||||| | || ||||| |||||| ||| ||||| || || | | || || Sbjct 126549 GTGGATGTTGAGACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGT 126490 Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942 | ||||| || | ||| ||| ||||| || ||| |||||||| || | ||| Sbjct 126489 ATCGTAGATGCCCTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTG 126430 Query 111943 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT--GG 112000 || || ||||| || ||||||||||| || | ||||| |||| | ||| || Sbjct 126429 GGGCTGGGGAGTACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAAGGT--CTTGAGG 126372 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||||| || ||| ||||| | ||| |||| ||| || || ||| |||| || Sbjct 126371 GACATGAGGTTGTAAGTCTCAATGACCCGCTCAACGTCGTCTCCCCAGATACCGACAGCA 126312 Query 112061 ACCCGCATGAACATGTACTGTGG 112083 || ||||||| ||||| ||| || Sbjct 126311 ACACGCATGATCATGTGCTGGGG 126289 >seq46 Length=277877 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || ||||||||||||||| ||||| || || || || || ||| || || Sbjct 256157 GGCAAAGTCGGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAAAAGGTAAGGCC 256216 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| |||||||| | ||| | || | | ||| | ||| ||||||||| Sbjct 256217 AGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGAT 256276 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 |||||| || ||||| || | || || | ||| |||| Sbjct 256277 ACCCTCGACGGCAGCAAAGGCGACGAGACGCTGGGCAAAGG 256317 >seq62 Length=222237 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/312 (67%), Gaps = 8/312 (3%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||| || ||||| ||||||| || || || || | || || | |||||||| Sbjct 125259 GCATCGATTTCATCGATGAAGATGATGCAGGGAGCGTTCTTCCGCGCCGTGGCAAAGAGA 125318 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAGC 11747 || || || | ||||| ||||| ||||||||||| || || | | | || || | Sbjct 125319 TCACGGACACGGGACGCACCGACACCGACAAACATCTCGACGAATTCGGAACCGCTGA-C 125377 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 ||| || ||| || || | |||||||| || | || ||| || || ||||| || | Sbjct 125378 ACT-GAAGAAGGGAACCTGCGATTCACCGGCAGTCGCCTTGGCAAGCAGAGTCTTACCGG 125436 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACTTCCAAAATA 11865 |||| || ||| | || | || || || |||||||||||||| |||| | | Sbjct 125437 TACCGGGGGGACCAGACAGGATAGCACCACGAGGGATCTTGGCACCGAGCTTCTGGA--A 125494 Query 11866 TCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAAT 11925 | |||||| | |||||| || | |||| ||| || || | |||||| | || || Sbjct 125495 GCGCTCGGGCTCCTTGAGGAACTGGACAAACTCCATAATCTCGACCTTGGCCTCATCCAT 125554 Query 11926 CCCCTCAACATC 11937 ||| | ||||| Sbjct 125555 ACCCGCGACATC 125566 >seq165 Length=79461 Score = 86.0 bits (94), Expect = 8e-12 Identities = 129/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 170025 TCGCAAAGCATAACAGCGAACAAGATTGTTGGGTCATAATCAAGGACATTGTTTATGACC 170084 |||| ||||| |||| | | | || || |||||||| || | | || | || ||| Sbjct 23605 TCGCCAAGCACAACACCCAGGATGACTGCTGGGTCATTGTCCACGGCAAGGCCTACGACA 23546 Query 170085 TCACAAAATTCCTTCCAGATCACCCCGGTGGTAAGAAGGCGATCATGCTC---TTTGCTG 170141 ||||| | ||||| || || ||||||||||| | ||| |||||| ||| | ||| | Sbjct 23545 TCACAGAGTTCCTCCCCGAGCACCCCGGTGGCATGAA---GATCATCCTCAAGTATGCCG 23489 Query 170142 GCAAAGATGCAACTGAAGAGTTTGATATGCTTCATCCCCCGAATGTTCTTAAAAAGTACC 170201 |||| ||||| || || ||||||||| | |||||||| | ||| | ||||||| Sbjct 23488 GCAAGGATGCTACCGAGGAGTTTGATCCCATCCATCCCCCAGACACTCTCGAGAAGTACC 23429 Query 170202 TG 170203 || Sbjct 23428 TG 23427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628029189556800