Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq86 277 2e-69 seq46 140 4e-28 seq62 82.4 9e-11 >seq86 Length=170212 Score = 277 bits (306), Expect = 2e-69 Identities = 1128/1753 (64%), Gaps = 61/1753 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 |||||||||||||| || |||||||| ||| ||||||| | | |||||| || Sbjct 128012 CGGAGGTAGTACATGCCGGTCTTGAGACCCATCTTCCAGCCGGCGAAATGCATGCTGGTA 127953 Query 117897 AACTTGGAGAGGGTTGGACTTTC---CATGAAGAGGTTCATACTTTGGGATTGATCGATG 117953 | |||| | ||| || ||| |||| | ||| | ||||| ||||| ||| Sbjct 127952 ATCTTGCCCATGGTGGG---TTCGCGCATGTGAATGTTGAGGGACTGGGACTGATCAATG 127896 Query 117954 AAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA--TTTCCCACACAG 118011 ||| || ||||| || ||||| | | || || | | || | ||||| || | Sbjct 127895 AAGGCACCACGATCGGCAGCCATCTTGA-CA-ATGGTACGCTGAGAAATCTCCCAGACGG 127838 Query 118012 TCCTGTAGAGGTTCTTAATATCATCTGGGATATCCAC--GATATTTTGGATGGATCCACC 118069 || | ||||| ||| || |||| ||||| || | ||| || ||||| || || || Sbjct 127837 TCTTATAGAGAGCCTTGATGTCAT-TGGGA-ATGCTTTGGATGTTCTGGATAGAACCGCC 127780 Query 118070 CGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTC 118129 | | | ||| | | |||||| | | ||||| || || |||| |||||| Sbjct 127779 CTCAGCAATGATGCGGTTCTTCATGGCATCAGACCAAAGGCCCATCTCCACAAGATCCCT 127720 Query 118130 CACGAGATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGAT 118186 |||| || ||||| || ||||| || ||||| |||| | ||||| Sbjct 127719 ---GAGAAGCCAGGGGTTGACGACCTGGAACTCGCCGGCGAGCACACGTCGTTGGTAGAT 127663 Query 118187 ATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGT 118246 || | ||||| ||||| |||||||| ||||| || | || || | ||||| || || Sbjct 127662 GTTAGAGGTGTAAGGCTCGAAGCACTCGTTGTTGCCAAGAATCTGAGAAGTGGAAGCAGT 127603 Query 118247 GGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAG 118306 |||||| || || | || || ||||| || | ||| | | | | ||| ||||||| Sbjct 127602 GGGCATAGGAGCAAGCAGCAGACTGTTGCGAACACCGTACTTCTTGATGTCCGCCTTGAG 127543 Query 118307 AGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTGCCACATATCAAACTGGAGGAT 118363 ||| |||||| || || || || | | |||||| || | |||||||| Sbjct 127542 AGCAGTCCAGTCCCAG---AGGTTGGTAGGGGTGACGTTCCACATGTCGTATTGGAGGAT 127486 Query 118364 ACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC 118423 || ||||| | ||||| || || | || | || ||||||| ||| || | | Sbjct 127485 TCCCTGGGAGACGGGCGAGCCTTCGTAGGTGGCGTACGGGCCCTGCTCCTTGGCGAGCTG 127426 Query 118424 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA--TTGCC 118481 | | || || || ||||| || || || || ||||| | || | |||| Sbjct 127425 GCAAGAGGCAGTAAGAGCGGCGTGGTAGATGGTCTCGAAAATCTGGATGTTGAGCTTGC- 127367 Query 118482 TTGGCCTCGTCGGAATCAAACGCGAGTCGGC-ACAAAATAAATACATCCGCGAGACCTTG 118540 | ||| |||| ||||| || | | ||| | || ||| |||| || ||||| || Sbjct 127366 -TAGCCGCGTCAGAATCGAAGGGCATGCGGAGAGCCAAGAAAG-CATCAGCAAGACCCTG 127309 Query 118541 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATA 118600 ||||||| ||||| || || || | ||| || || | || || ||||| || Sbjct 127308 AACACCGACACCAATGGGACGGTGACGCATGTTGCTGTTGTGGGCCTCCTTAACGGGGTA 127249 Query 118601 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 118660 || | || || | | | || || || | ||| || | |||| || || || Sbjct 127248 GTGGTTGATGTCAATGATCTTGTTGAGGTTGCGGACGACGACTTGAGTGACCTCGTGCAG 127189 Query 118661 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 118720 ||| | | | || || | | |||| | | || | | | |||||||| || || Sbjct 127188 CTTCTTGAAGTCGTAAGAGGCATTCTCGTAGTCGATAAAGGCGGAAAGGGCGAGAGAGGC 127129 Query 118721 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT 118780 || || || || | ||||||| | ||| |||||| ||||| || ||||||| ||| Sbjct 127128 AAGGTTGCAAACGGCAACCTCATCCGGAGCAGAGTACTCGATAATCTCAGTGCACAGGTT 127069 Query 118781 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 118840 || || ||||| |||| |||||| || || ||| ||| || ||||||||||| Sbjct 127068 GGAGCTGCGGATGGTACCCAGGTTCTTCTGGTTACTCTTGCGGTTGCAGGCATCCTTGTA 127009 Query 118841 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGC 118900 |||||| | || | |||||||| || |||| || ||| || || | ||| | || Sbjct 127008 GAGCATGAAGGGGTTGCCCGTCTCAGTCTGGGCCTCGAGGATGGCATACCAAA-----GC 126954 Query 118901 AGCTGGCACAGTGGCGTTGGCTCGCCCCT---CTTCCT---CGTACTTTGTGTAGAGGGC 118954 |||| | || || | || |||| |||||| |||||||| ||| || || Sbjct 126953 TTCTGGGCCT-TGACGGTCTTGCGACCCTTGCCTTCCTTTTCGTACTTTTCGTACAGAGC 126895 Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 ||| ||||| ||||| | || | || || || || | ||||| | ||||| Sbjct 126894 TTCGAACTCGTCACCGTAAACGTCGGCAAGGCCAGGGCACTCGTGAGGGCACATGAGAGT 126835 Query 119015 CCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 119074 ||| || || || |||||| ||||||||||| || || ||||||||||| || ||| Sbjct 126834 CCACTGGCCGTTCTGCTCAACACGCTTCATGAAAAGATCGGGGATCCAGAGGGCAAGGAA 126775 Query 119075 GAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 119134 |||||| ||| ||| | ||||| | || || || || | || | || || | Sbjct 126774 GAGATCGCGAGCGCGCACCTCTTCCTTACCGTGGTTCTTGCGGAGGTCAAGGAACTCGAA 126715 Query 119135 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACC 119188 || ||| |||||||| || || ||||| | |||| | || | |||| || Sbjct 126714 GACATCGGCGTGCCAAGGCTCGAGGTAGATGGCGAAAGCACC---AGGACGCTTGTTGCC 126658 Query 119189 AGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATC 119248 | |||||| || || | || ||| ||| || ||||| ||||| |||| |||||| | Sbjct 126657 ACCCTGGTCAACGTAGCGGGCGGTGTTGTTGAAGACACGGAGCATGGGAACGATACCGTT 126598 Query 119249 GGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGC 119306 |||| ||| || || || ||| || ||| | | |||| | | |||||||| Sbjct 126597 GGATGTGCCGTTGGTACCAGCGATGTAGGAGCC--AGTGGCACGAATGCGGTGGATGTTG 126540 Query 119307 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 119366 | ||| ||||| || ||| ||| ||||| ||||| | |||| | ||||||| Sbjct 126539 AGACCGATACCGCCAGCCATCTTAGAGATCATGGCGCAGGTCTTGAGGGTATCGTAGATG 126480 Query 119367 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGT 119426 || ||||| ||| |||| | ||| |||||||| || | || ||| ||| Sbjct 126479 CCCTCGATACTGTCTTCCTTCATGTCGACCAGGAAGCACGAAGAGAGCTGGGGCTGGGGA 126420 Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTT--GGGACATCTTGT 119484 ||||| ||||||||||| || || | |||||| |||| | ||| ||||||| || Sbjct 126419 GTACCGGCGTTGAAGAGGGTGGGAGAAGCGTGGGTGAAGGT--CTTGAGGGACATGAGGT 126362 Query 119485 CGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAA 119544 ||| ||||| | ||| || ||| || || ||||||| | || ||||| | Sbjct 126361 TGTAAGTCTCAATGACCCGCTCAACGTCGTCTCCCCAGATACCGACAGCAACACGCATGA 126302 Query 119545 ACATGTATTGGGG 119557 ||||| ||||| Sbjct 126301 TCATGTGCTGGGG 126289 >seq46 Length=277877 Score = 140 bits (154), Expect = 4e-28 Identities = 522/811 (64%), Gaps = 13/811 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| ||||| ||||||||||||||||| ||||| || | | || |||||||| Sbjct 255870 TAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCATG 255929 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | || | | || | || | | | | |||||||| Sbjct 255930 AAGTCGAAGGGGTTAGTCGACCTGTAGATCTTCTCGTTGCCGAGGGCGACA-AGGAGACG 255988 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||| ||||||| ||| |||| |||||| || | ||| || Sbjct 255989 ATCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGAAGGGCGCA 256048 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| || || || |||| ||| |||||| || || || | ||| | || Sbjct 256049 AGGGAGGGCCTCAGTGAGGAACTCCTGCTCAATTCTGACGGCATCGACAATGATTTCCTG 256108 Query 129967 AATGGTCTCCGTGCCAGGTC---TATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || || | ||| || | | ||| | || |||||| |||||| || Sbjct 256109 GATCAGCTGCTTGCTGGGGCGGTTGTTGAGGTGAGA---GAAGAGAAGGCAGGCAAAGTC 256165 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 |||||||||||| |||||||||||||| || || || ||| || || |||||||| Sbjct 256166 GGTGTGGAGACCCTCATCACGGGAGATGAGCTCGTTGGAAAAGGTAAGGCCAGGCATGAG 256225 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | || ||||||||| ||||| || Sbjct 256226 ACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATACCCTCGAC 256285 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 || || || | |||||||| ||||||| | | ||| || ||| | Sbjct 256286 GGCAGCAAAGGCGACGAGACGCTGGGCAAAGGTGGAGCTCTTGTCGGTAATCCAGCGAAG 256345 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||| | |||||||| ||| || |||| ||| | || || | ||||| | | Sbjct 256346 AGCCCAGTCAGCCTTTTTGCGGATGCAAGGGATGGTGTCAATAGCGTTGAAGAGGTAGGT 256405 Query 130264 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323 | | | || || || |||||||| | || ||||| || || || ||| || | Sbjct 256406 CCTCTGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGAGGGAGTAGGTCTCGGAGTGAAT 256465 Query 130324 CAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 130382 | | ||| || | ||| | ||||||| |||| || ||| ||||| || || Sbjct 256466 GTTCTCCATCAT-GATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATCTGGACTTCGC 256524 Query 130383 CTGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 130442 | || | || |||||| ||||| |||||||| |||| || || || | Sbjct 256525 CACTGAAGCGCTCGACGAGGTTCTCATTGACAATACCATCGGAGGCAGCGAAGAAAGCGA 256584 Query 130443 GGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGAT 130499 | || | ||||| || || | ||||||| | | |||||||||| ||| | Sbjct 256585 GAATGTGGGAGATGAAGAACTTCTCGTCGTCGTTCAACCTGTTGTTCCAGTCGTGAAGGT 256644 Query 130500 CCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||| |||||||| | |||||| || ||||| Sbjct 256645 CCTTGGAGAGATCAATCTCCTCGGCGGTCCA 256675 >seq62 Length=222237 Score = 82.4 bits (90), Expect = 9e-11 Identities = 160/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC 14295 ||| | ||| || |||||||||||||| | ||| || || || | || || | Sbjct 125252 ACCAATGGCATCGATTTCATCGATGAAGATGATGCAGGGAGCGTTCTTCCGCGCCGTGGC 125311 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG--CG 14353 ||||| ||| || || | ||||||||||| ||||||||||| || || | || | Sbjct 125312 AAAGAGATCACGGACACGGGACGCACCGACACCGACAAACATCTCGACGAATTCGGAACC 125371 Query 14354 GCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 14413 || | ||| | || |||||| || | |||||||| || | || ||| || || ||| Sbjct 125372 GCTG-ACACT-GAAGAAGGGAACCTGCGATTCACCGGCAGTCGCCTTGGCAAGCAGAGTC 125429 Query 14414 TTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || || || || || || | || | |||||||| |||||| ||||||| Sbjct 125430 TTACCGGTACCGGGGGGACCAGACAGGATAGCACCACGAGGGATCTTGGCACC 125482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618432432502480