Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq86 302 5e-77 seq46 122 1e-22 seq62 105 8e-18 seq36 89.7 6e-13 >seq86 Length=170212 Score = 302 bits (334), Expect = 5e-77 Identities = 1133/1755 (65%), Gaps = 65/1755 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || ||||||| || || ||| |||| ||| Sbjct 126289 CCCCAGCACATGATCATGCGTGTTGCTGTCGGTATCTGGGGAGACGACGTTGAGCGGGTC 126348 Query 104282 TTGGAGACATACGACAAGATGTCCC--AAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||| ||| || ||||||| ||| | |||| ||||| | || ||||||| Sbjct 126349 ATTGAGACTTACAACCTCATGTCCCTCAAG--ACCTTCACCCACGCTTCTCCCACCCTCT 126406 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || ||||| | || |||||||| ||| || ||||| | Sbjct 126407 TCAACGCCGGTACTCCCCAGCCCCAGCTCTCTTCGTGCTTCCTGGTCGACATGAAGGAAG 126466 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || ||| | || ||||| | || || | | || || ||||| ||| ||||| Sbjct 126467 ACAGTATCGAGGGCATCTACGATACCCTCAAGACCTGCGCCATGATCTCTAAGATGGCTG 126526 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 104517 | ||||| || | ||||||| | | |||| | ||| || ||| || || Sbjct 126527 GCGGTATCGGTCTCAACATCCACCGCATTCGTGCCACTGG--CTCCTACATCGCTGGTAC 126584 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || ||| | ||||| |||| ||||| || || || ||| ||| || ||||| Sbjct 126585 CAACGGCACATCCAACGGTATCGTTCCCATGCTCCGTGTCTTCAACAACACCGCCCGCTA 126644 Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 || | || | ||| ||||| || || |||| |||| || ||||| || Sbjct 126645 CGTTGACCAGGGTGGCAACAAGCGTCCT---GGTGCTTTCGCCATCTACCTCGAGCCTTG 126701 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCG 104691 |||||| ||| || | ||||||||||| | || ||||| ||| | || |||| ||| Sbjct 126702 GCACGCCGATGTCTTCGAGTTCCTTGACCTCCGCAAGAACCACGGTAAGGAAGAGGTGCG 126761 Query 104692 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 104751 |||||||||||| || |||||||| || ||||| ||||||||| | |||||| | Sbjct 126762 CGCTCGCGATCTCTTCCTTGCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTTGAGCA 126821 Query 104752 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGG 104811 || ||| | ||| ||||| | || || || || ||||| || |||| | || Sbjct 126822 GAACGGCCAGTGGACTCTCATGTGCCCTCACGAGTGCCCTGGCCTTGCCGACGTTTACGG 126881 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACG---AGGAAG---AAGGTCGGGCGACTGC 104865 ||| ||||| ||||| || ||| |||||||| |||||| | ||||| ||| | Sbjct 126882 TGACGAGTTCGAAGCTCTGTACGAAAAGTACGAAAAGGAAGGCAAGGGTCGCAAGACCGT 126941 Query 104866 GACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 | || |||| || | ||| | || || ||| || | || || ||||| || | Sbjct 126942 CAAGG-CCCAGAAGC-----TTTGGTATGCCATCCTCGAGGCCCAGACTGAGACGGGCAA 126995 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 || | |||||| ||||| || ||||| |||| |||||||| || ||||| ||||| Sbjct 126996 CCCCTTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGTAACCAGAAGAACCTGGGTAC 127055 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 ||| || ||||| || || || || || | || | | | |||||| || Sbjct 127056 CATCCGCAGCTCCAACCTGTGCACTGAGATTATCGAGTACTCTGCTCCGGATGAGGTTGC 127115 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATT 105105 || || ||||| || || |||| || || | | | || | || || | | | Sbjct 127116 CGTTTGCAACCTTGCCTCTCTCGCCCTTTCCGCCTTTATCGA--CTACGAGAATGCCTCT 127173 Query 105106 T--GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163 | || | | || || ||||| || || || ||| | ||||| |||| | Sbjct 127174 TACGACTTCAAGAAGCTGCACGAGGTCACTCAAGTCGTCGTCCGCAACCTCAACAAGATC 127233 Query 105164 ATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCA 105223 ||||| | || ||||||||| || || | || || ||| | |||||||| Sbjct 127234 ATTGACATCAACCACTACCCCGTTAAGGAGGCCCACAACAGCAACATGCGTCACCGTCCC 127293 Query 105224 ATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG-CATTTGA 105282 |||||| |||||||||||||||| || |||| ||| || | || || | | || || Sbjct 127294 ATTGGTGTCGGTGTTCAGGGTCTTGCTGATGCTTTC-TTGGCTCTCCGCATGCCCTTCGA 127352 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 ||| |||| || | | |||| | || || |||||||| || ||||||||||| Sbjct 127353 TTCTGACGCGGCTAGCAAGCTCAACATCCAGATTTTCGAGACCATCTACCACGCCGCTCT 127412 Query 105343 TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 | || || || | || ||| | || || || | |||| || || || || Sbjct 127413 TACTGCCTCTTGCCAGCTCGCCAAGGAGCAGGGCCCGTACGCCACCTACGAAGGCTCGCC 127472 Query 105403 AGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA----GACCAAGCTTCACT 105458 | || || || | || |||| || |||| |||| || | ||||| || || Sbjct 127473 CGTCTCCCAGGGAATCCTCCAATACGACATGT-GGAACGTCACCCCTACCAACCT---CT 127528 Query 105459 ACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCA 105518 |||||| |||||||||| ||||||| || | ||| |||| |||||||| || Sbjct 127529 GGGACTGGACTGCTCTCAAGGCGGACATCAAGAAGTACGGTGTTCGCAACAGTCTGCTGC 127588 Query 105519 TGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 105578 | ||||| ||||| || || ||||| | || || | || || || || ||||| || | Sbjct 127589 TTGCTCCTATGCCCACTGCTTCCACTTCTCAGATTCTTGGCAACAACGAGTGCTTCGAGC 127648 Query 105579 CCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA-- 105636 | ||||| | |||||||| | || | ||||| || ||||| | | ||||| Sbjct 127649 CTTACACCTCTAACATCTACCAACGACGTGTGCTCGCCGGCGAGTTCCAGGTCGTCAACC 127708 Query 105637 -CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATC 105695 | || |||| |||| || ||||| || || ||||| | | |||||| | | Sbjct 127709 CCTGGCTTCTCAGGGAT---CTTGTGGAGATGGGCCTTTGGTCTGATGCCATGAAGAACC 127765 Query 105696 TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA 105755 ||| | | ||| ||||| || || || || ||||| ||||| || ||| Sbjct 127766 GCATCATTGCTGAGGGCGGTTCTATCCAGAACATCCAAAGCATTCCCAATGACATCAAGG 127825 Query 105756 AGTTGTACCGCACAGTTTGGGAAAT---CAAGATGAAGGATGTCATTGACATGGCCGCAG 105812 | || || || ||||| || || | ||||| | ||||| || | Sbjct 127826 CTCTCTATAAGACCGTCTGGGAGATTTCTCAGCGTACCATTGTCA---AGATGGCTGCCG 127882 Query 105813 ATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATG---GAAAGTCC 105867 |||||||| ||||||||||| |||| ||| | || | |||| ||| || Sbjct 127883 ATCGTGGTGCCTTCATTGATC--AGTCCCAGTCCCTCAACATTCACATGCGCGAA---CC 127937 Query 105868 AACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGG 105927 || ||| |||| | | ||||| | | | ||||||| ||||||||| || || Sbjct 127938 CACCATGGGCAAGATTACCAGCATGCATTTCGCCGGCTGGAAGATGGGTCTCAAGACCGG 127997 Query 105928 GATGTATTACCTCCG 105942 ||||| |||||||| Sbjct 127998 CATGTACTACCTCCG 128012 >seq46 Length=277877 Score = 122 bits (134), Expect = 1e-22 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| |||| ||| |||| ||||| || ||||||||||||||| ||| | | Sbjct 256317 CCTTTGCCCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCTT 256258 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 || | | || | |||||||||||||| ||||||||||| || || ||| ||||||| Sbjct 256257 TCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCTTACCTTTTCCAACG 256198 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| ||||| ||||| ||||| |||||| || ||||| Sbjct 256197 AGCTCATCTCCCGTGATGAGGGTCTCCACACCGACTTTGC 256158 >seq62 Length=222237 Score = 105 bits (116), Expect = 8e-18 Identities = 276/414 (67%), Gaps = 18/414 (4%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 ||| |||||||| ||||| | || || | |||||||| || || || || |||| Sbjct 125075 ATCGAAGCGACCGGGACGCATAAGAGCCTTGTCAAGGATGTCGGGTCGGTTGGTACCGGC 125134 Query 9586 GATGACAACAATACCTGTTTCATT--ATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || ||| || |||||| | || || || |||||||||||||| | || ||||| Sbjct 125135 GAGGACGAC--TACCTGCTCAGTTGTATTGAATCCATCCATCTCTGTAAGAATCTGGTTG 125192 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTG--------CT 9695 | || || || || || || || || || ||| | ||| | | Sbjct 125193 AGGGTAGCCTCGCGCTCGTCGTTTCCTC-CACCCCTGAAGC-CGCCGTCGGAACGAGACC 125250 Query 9696 TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTT 9755 || | |||||| || ||||| ||||||| |||||| || || | || || Sbjct 125251 GACCAATGGCATCGATTTCATCGATGAAGATGATGCAGGGAGCGTTCTTCCGCGCCGTGG 125310 Query 9756 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG--C 9813 |||||||||| || ||||| || || ||||| ||||||||||| || || | | | Sbjct 125311 CAAAGAGATCACGGACACGGGACGCACCGACACCGACAAACATCTCGACGAATTCGGAAC 125370 Query 9814 GGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 9873 || || || || | |||||| || | |||||||| ||| | || ||| || ||||| Sbjct 125371 CGCTGA-CACTGAA-GAAGGGAACCTGCGATTCACCGGCAGTCGCCTTGGCAAGCAGAGT 125428 Query 9874 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||||| ||||| || ||| | |||| ||||| || || |||||||| || Sbjct 125429 CTTACCGGTACCGGGGGGACCAGACAGGATAGCACCACGAGGGATCTTGGCACC 125482 >seq36 Length=304849 Score = 89.7 bits (98), Expect = 6e-13 Identities = 298/464 (64%), Gaps = 0/464 (0%) Strand=Plus/Plus Query 168276 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 168335 |||| ||||||||||| |||| |||||| || | ||||||||| | | || |||| Sbjct 10709 AACCGGTACCGATACCATCTGCACCGTTAACCAAAACCATGGGAATAATGGGAGCATAGA 10768 Query 168336 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 168395 | |||||||| | |||||||| | | | ||| | || ||||| | Sbjct 10769 CCTTGGGCTCAATCAGTTTGCCATCGTCGAACTGGAATTCAAGATTGGGCTCATCGAGAG 10828 Query 168396 GATCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 168455 | | |||||||||||| || | || | || ||| || | | | | Sbjct 10829 GGTGAAAGATCTTTCGCGCCAAGGGAGACAGTCTCGTGTGGATGTAACGAGCGCTGGCAG 10888 Query 168456 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 168515 |||| |||||| ||||||| ||| || | ||| | ||||| ||| ||||| | Sbjct 10889 CATCGGAACCACCGGAAAGACGCGAACCGAAGTTACCGCTAGGCTCGAGACAGTTGATGT 10948 Query 168516 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 168575 |||||||||| | ||| | ||||| | |||||| | | ||||| ||||| Sbjct 10949 TGTTTGAACCGACAAAGTTCTGCGCCAGACCAATAATCGTTTGCTGCAGAGACTGTTCAC 11008 Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 168635 |||||||||| || || || | ||| | | ||||||| | || || || | Sbjct 11009 CGTGGTGGTAGGCTGCCTCCTTGGACACATAACCGGCCAACTCGACAACCTTTTGATCGT 11068 Query 168636 CCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 168695 |||| || | | ||| || || ||| |||||||||||| ||||| ||||||| Sbjct 11069 GAATGAGGTTTTGCTTGAAACAGCCGAACAGAACCTTGCGTTGACCGGGCTTCAGACCAT 11128 Query 168696 CCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAG 168739 || ||||| | ||| || || | ||| |||| ||||||| Sbjct 11129 CCACCATGGACGGGATCGATCGAATGTTGTCTGCCATACTGAAG 11172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258189907920