Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq18 132 1e-25 seq171 120 9e-22 seq14 86.0 2e-11 seq6 84.2 7e-11 >seq18 Length=383124 Score = 132 bits (146), Expect = 1e-25 Identities = 157/209 (75%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| |||||||| ||| || ||||| || |||||||| | || || ||||| || | Sbjct 57889 CAAG-TGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTCCGGCCATCCTCCA 57831 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 || || ||||||||||| ||||| ||||| ||||| || || || || || ||||| | Sbjct 57830 ACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGA 57771 Query 140650 T-TTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTT 140708 | ||| |||| || |||||||||| ||| || | || ||||| || |||| ||||| Sbjct 57770 TCTTTTGCTTC-ACGTTATCAATCGTATCCGAAGACTCGACTTCCAGCGTAATCGTCTTG 57712 Query 140709 CCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || | || || || ||||||||||| Sbjct 57711 CCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Score = 123 bits (136), Expect = 8e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||| || ||||| || || || Sbjct 57685 CATACCACCACGAAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTC 57626 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || |||||||| || || ||||| ||||||||||| Sbjct 57625 GGAGAGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGG 57566 Query 140627 AGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGATGGTT 140685 || || || || || ||||| || ||| ||||| || || || || | || || | | Sbjct 57565 TGGGATACCCTCCTTGTCCTGGATCTTTTGCTTT-ACGTTGTCGATGGTGTCGGAAGACT 57507 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || |||| ||||| ||||| || || || || ||||||||||| Sbjct 57506 CAACCTCGAGAGTAATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 >seq171 Length=76701 Score = 120 bits (132), Expect = 9e-22 Identities = 437/677 (65%), Gaps = 18/677 (3%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| ||||| ||||| || |||||| | || || || || | ||| || || ||||| Sbjct 3806 GAAATCATTGCCAATGACCAGGGTAACCGCACCACCCCCTCGTTCGTCGCTTTCACCGAC 3865 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| | | |||||| | || || || || | || || || || || Sbjct 3866 ACCGAGCGTCTCGTCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCGGCCAACACC 3925 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATC 349437 || || ||||| ||||| || |||||| | | || || ||| | || || | Sbjct 3926 GTCTTCGATGCCAAGCGTCTCATTGGTCGCAAGTTCTCCGACCCCGAGGTC----CAGGC 3981 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 ||| | || || || || || | || | | | | |||| || || | || | Sbjct 3982 CGATATGAAGCACTTCCCCTTCAAGGTCAT--CGACCGT-GGTGGCAAGCCCGTCATCCA 4038 Query 349498 GGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCC--GAAGAAATTTCATCAATGGT 349554 ||| || | || || || || || | || |||| || || || || | ||| | Sbjct 4039 GGTCGAGTTCAAGGGCGAGACCAAGG---TCTTCACCCCCGAGGAGATCTCCGCCATGAT 4095 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || |||||||| | ||||| || || | || | || || | | || || Sbjct 4096 CCTCCAGAAGATGAAGGAGACCGCTGAGGCCTACCTCGGCGGCACCGTTAACAACGCCGT 4155 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | || || || ||||| || || || | |||||| || || || || || || Sbjct 4156 CGTCACCGTTCCCGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACGCCGGTCT 4215 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 |||||| || | || || || | || || || || ||||| ||||| || ||||| || Sbjct 4216 CATTGCTGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCTGCCGCCATTGCCTA 4275 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || || || | | || || || | || || || ||| | |||||||| Sbjct 4276 CGGTCTCGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGG 4335 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || || || |||| ||||| || ||||| || || | ||||| Sbjct 4336 TACCTTCGATGTCTCTCTCCTCACCATTGAGGAGGGTATCTTTGAGGTCAAGTCTACTGC 4395 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 ||||| || || | ||||| || ||||| || || |||||||| || |||||| | Sbjct 4396 CGGTGACACTCACTTGGGTGGTGAGGATTTCGACAACCGTCTCGTCAACCACTTTGTTCA 4455 Query 349915 AGAATTTAAGCGTCAAG 349931 || || ||||| |||| Sbjct 4456 GGAGTTCAAGCG-CAAG 4471 >seq14 Length=412804 Score = 86.0 bits (94), Expect = 2e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 266973 ATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCT 267032 || || ||||| ||| | ||| ||||| ||||| |||||||||||| | | | | Sbjct 95081 ATTGGTGATAAGTTTGCGTCTCGTCACGGTCAAAAGGGTACCATTGGTGTTACTTACCGT 95022 Query 267033 GAAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCAT 267092 |||| ||||||| |||| | || || || | ||||||||||| || || ||||| Sbjct 95021 CAAGAGGATATGCCGTTTACCGCCGAGGGTATCACGCCTGATATTATCATCAACCCTCAC 94962 Query 267093 GCTATTCCTAGTCGTATGACAATTG 267117 || |||||| ||||||||||||| Sbjct 94961 GCCATTCCTTCGCGTATGACAATTG 94937 >seq6 Length=466918 Score = 84.2 bits (92), Expect = 7e-11 Identities = 185/272 (68%), Gaps = 9/272 (3%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| || ||||| || ||||| || || || ||||||| || || || |||||| Sbjct 114515 GCTGTCATCACTGTCCCTGCCTACTTCAACGACAACCAGCGTCAGGCTACCAAGGATGCT 114574 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || || || || ||||| ||||| || ||| Sbjct 114575 GGTGCCATTGCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCTGCCGCCATT 114634 Query 349730 GCATATGGGCTTGATAA-AATGAGTGACCAAGaaaaa----aaTATTCTTATTTTTGATT 349784 || || || || | | || ||| |||| || | || | || || | ||| Sbjct 114635 GCCTACGGTCTCGGTGCCAACAAGT--CCAACAAGGAGCGCAACGTCCTCATCTACGATC 114692 Query 349785 TAGGTGGTGGTACTTTTGATGTATCACTACT-AACACTTGAAGAGGGAATTTTTGAAGTT 349843 | |||||||||||||| ||||| || || || |||| | | | || | || || Sbjct 114693 TCGGTGGTGGTACTTTCGATGTCTCCCTCCTCAACA-TCCAGGGTGGTGTCTTCACCGTC 114751 Query 349844 AAAGCAACTGCTGGTGATACACATCTTGGTGG 349875 || || || |||||||| || ||||||||||| Sbjct 114752 AAGGCCACCGCTGGTGACACCCATCTTGGTGG 114783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515247449717474