Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq86 288 1e-72 seq46 127 2e-24 seq36 120 3e-22 >seq86 Length=170212 Score = 288 bits (318), Expect = 1e-72 Identities = 517/754 (69%), Gaps = 16/754 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | |||||| || |||||| ||| ||| |||||| ||| Sbjct 126302 TCATGCGTGTTGCTGTCGGTATCTGGGGAGACGACGTTGAGCGGGTCATTGAGACTTACA 126361 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| || ||| ||| || ||||| | || ||||| |||||||| ||||| Sbjct 126362 ACCTCATGTCCCTCAAGACCTTCACCCACGCTTCTCCCACCCTCTTCAACGCCGGTACTC 126421 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || || ||| | || ||||||||||| | |||||||| ||| ||||| |||| Sbjct 126422 CCCAGCCCCAGCTCTCTTCGTGCTTCCTGGTCGACATGAAGGAAGACAGTATCGAGGGCA 126481 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || |||||| || ||| ||||| ||| | | || ||||||||| || Sbjct 126482 TCTACGATACCCTCAAGACCTGCGCCATGATCTCTAAGATGGCTGGCGGTATCGGTCTCA 126541 Query 53433 ACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || || | || | ||||| | ||| | ||| || || |||||| || | Sbjct 126542 ACA--TCCACCGCATTCGTGCCACTGGCTCCTACATCGCTGGTACCAACGGCACATCCAA 126599 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || ||||| || |||||||| |||||||||||||| ||||| ||||| |||||||||| Sbjct 126600 CGGTATCGTTCCCATGCTCCGTGTCTTCAACAACACCGCCCGCTACGTTGACCAGGGTGG 126659 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | |||||||||||||||||||| ||||||||||| | | || Sbjct 126660 CAACAAGCGTCCTGGTGCTTTCGCCATCTACCTCGAGCCTTGGCACGCCGATGTCTTCGA 126719 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| || || || || ||| || ||| | |||||| ||||| || || || || Sbjct 126720 GTTCCTTGACCTCCGCAAGAACCACGGTAAGGAAGAGGTGCGCGCTCGCGATCTCTTCCT 126779 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || || ||||| || || || |||||| | || ||| || ||| ||||| || Sbjct 126780 TGCCCTCTGGATCCCCGATCTTTTCATGAAGCGTGTTGAGCAGAACGGCCAGTGGACTCT 126839 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGAT 53790 |||||||| |||||||||| ||||| | || |||||||| ||||| | | | Sbjct 126840 CATGTGCCCTCACGAGTGCCCTGGCCTTGCCGACGTTTACGGTGACGAGTTCGAAGCTCT 126899 Query 53791 GTATCGGACGTAC------GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGA 53844 ||| | |||| | || |||| ||| |||| |||||||| | | Sbjct 126900 GTACGAAAAGTACGAAAAGGAAGGCAAGGGTCGC------AAGACCGTCAAGGCCCAGAA 126953 Query 53845 GGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAA 53904 | | ||| |||| |||||| || |||| |||||||| | || | |||| |||||| Sbjct 126954 GCTTTGGTATGCCATCCTCGAGGCCCAGACTGAGACGGGCAACCCCTTCATGCTCTACAA 127013 Query 53905 GGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||| | |||| ||||| |||||||||||| Sbjct 127014 GGATGCCTGCAACCGCAAGAGTAACCAGAAGAAC 127047 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/184 (72%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTGCTG---ATCGTGGTGC 55800 ||| || ||||||||| | ||| || |||| || || |||| |||||||||| Sbjct 127836 GACCGTCTGGGAGATTTCTCAGC---GTACCATTGTCAAGATGGCTGCCGATCGTGGTGC 127892 Query 55801 GTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG-GAGAATCCTTCACTGGCCAAGT 55859 | ||| || ||||||||||| || ||||| |||| | ||| || || ||| |||| Sbjct 127893 CTTCATTGATCAGTCCCAGTCCCTCAACATTCACATGCGCGAACCCACCA-TGGGCAAGA 127951 Query 55860 TGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGC 55919 | | | ||||| || ||| ||||||| ||| |||||||| || |||||||| || | Sbjct 127952 TTACCAGCATGCATTTCGCCGGCTGGAAGATGGGTCTCAAGACCGGCATGTACTACCTCC 128011 Query 55920 GGAC 55923 | || Sbjct 128012 GTAC 128015 >seq46 Length=277877 Score = 127 bits (140), Expect = 2e-24 Identities = 532/823 (65%), Gaps = 34/823 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || ||||| || || ||||||||||| || | | || ||||||||||| Sbjct 255870 TAGTCGCCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGAGAAATGTTCTCCATG 255929 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTGCCATG-AGG 74579 ||||||| ||||| | | | ||| || |||||| | | | | || | || Sbjct 255930 AAGTCGAAGGGGTTAGTCGACCTGTAGAT---CTTCTCGTTGCCGAGGGCGACAAGGAGA 255986 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 ||||| || || || | ||||||||| |||| | || | |||||| | || | Sbjct 255987 CGATCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCAAGAAGGGCG 256046 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699 || || || ||||| |||| ||||| ||| | || | | | | |||||| | Sbjct 256047 CAAGGGAGGGCCTCAGTGAGGAACTCCTGCTCAAT-TCTGACGGCA--TCGACAATGATT 256103 Query 74700 T----GAATGTCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGC 74752 | || || ||| |||| || | | ||||||||| | || | || ||| Sbjct 256104 TCCTGGATCAGCTGCTTGCTGGGGCGGTTGT---TGAGGTGAGAGAAGAGAAGGCA-GGC 256159 Query 74753 AAACTCCTGATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAG 74811 ||| || || ||| || ||||| | | || | || || ||||| | |||||||| Sbjct 256160 AAAGTCGGTGTG-GAGACCCTCATCACGGGAGATGAGCTCGTTGGAAAAGGTAAGGCCAG 256218 Query 74812 GCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGC 74871 |||| || || |||||||| | ||| ||||||| ||| | ||| ||||||||||| | Sbjct 256219 GCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGCACCGCTGAAGAAGATAC 256278 Query 74872 CTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA----TCGGAAGTCATC 74927 | ||||| ||||||||||| || || || || || |||| | | | || ||| Sbjct 256279 CCTCGACGGCAGCAAAGGCGACGAGACGCTGGGC-AAAGGTGGAGCTCTTGTCGGTAATC 256337 Query 74928 CAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAG 74987 || ||||||| ||||| ||| || ||||| || || || || | |||| Sbjct 256338 CAGCGAAGAGCCCAGTCAGCCTTTTTGCGGATGCAAGGGATGGTGTCAATAGCGTTGAAG 256397 Query 74988 AGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCC 75047 ||| | | ||| ||| ||||||| | |||| || | || ||||| ||||| Sbjct 256398 AGGTAGGTCCTCTGGGAGGGCTCCTTGATGTAAGTGTCGATGAGGAGGGAGTAGGTCTCG 256457 Query 75048 GAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGT 75107 || ||||| ||| | | |||| | ||||||| | || ||||| | ||||| Sbjct 256458 GAGTGAATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAGCGAGCCTCGGGGATCTGG 256517 Query 75108 ACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGA 75165 || | || |||| || | ||| ||||| |||| || || || ||||| |||| Sbjct 256518 ACTTCGCCACTGAAGCGCTC--GACGAGGTTCTCATTGACAATACCATCGGAGGCAGCGA 256575 Query 75166 AAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTGTCCCAAT 75222 | ||||| || | ||| ||| ||| ||||| | | |||| ||| | Sbjct 256576 AGAAAGCGAGAATGTGGGAGATGAAGAACTTCTCGTCGTCGTTCAACCTGTTGTTCCAGT 256635 Query 75223 CCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | | |||||| | | ||||||||||||| | |||||||| Sbjct 256636 CGTGAAGGTCCTTGGAGAGATCAATCTCCTCGGCGGTCCAGAA 256678 >seq36 Length=304849 Score = 120 bits (132), Expect = 3e-22 Identities = 298/450 (66%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 ||||||||||| || ||||||||||| |||| || ||| || | ||| || || || | | Sbjct 10711 CCGGTACCGATACCATCTGCACCGTTAACCAAAACCATGGGAATAATGGGAGCATAGACC 10770 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 | ||||| | | ||| || || || | | | ||| | | || | || || Sbjct 10771 TTGGGCTCAATCAGTTTGCCATCGTCGAACTGGAATTCAAGATTGGGCTCATCGAGAGGG 10830 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | || ||| ||| | || ||| || | |||| |||||| || | |||||| ||| Sbjct 10831 TGAAAGATCTTTCGCGCCAAGGGAGACAGTCTCGTGTGGATGTAACGAGCGCTGGCAGCA 10890 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 || ||||| | || |||| || || | || |||||||| ||||| |||| Sbjct 10891 TCGGAACCACCGGAAAGACGCGAACCGAAGTTACCGCTAGGCTCGAGACAGTTGATGTTG 10950 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 || | || || || ||||| |||| | | |||||| ||||||| | ||||||| Sbjct 10951 TTTGAACCGACAAAGTTCTGCGCCAGACCAATAATCGTTTGCTGCAGAGACTGTTCACCG 11010 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGT- 152234 ||||| || || | || || | | || || ||||||| || || | | || ||| Sbjct 11011 TGGTGGTAGGCTGCCTCCTTGGACACATAACCGGCCAACT-CGACAACCTTTTGATCGTG 11069 Query 152235 CGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTC 152294 | ||||| | ||||| |||| || | | |||||||| || || |||| ||| || Sbjct 11070 AATGAGGTTTTGCTTGAAACAGCCGAACAGAACCTTGCGTTGACCGGGCTTCAGACCATC 11129 Query 152295 CACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||| | || ||||| || || |||| Sbjct 11130 CACCATGGACGGGATCGATCGAATGTTGTC 11159 Score = 107 bits (118), Expect = 2e-18 Identities = 200/291 (69%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 117311 ATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTC 117370 |||||||||| ||| |||||||| ||||| | |||||||| |||||| | || || Sbjct 10870 ATGTAACGAGCGCTGGCAGCATCGGAACCACCGGAAAGACGCGAACCGAAGTTACCGCTA 10929 Query 117371 GGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTA 117430 ||||| | ||| | |||||| | || |||||||| || |||| | |||||| Sbjct 10930 GGCTCGAGACAGTTGATGTTGTTTGAACCGACAAAGTTCTGCGCCAGACCAATAATCGTT 10989 Query 117431 CCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGC 117490 || || | ||||| ||||| || || | || || | ||| || || |||| | Sbjct 10990 TGCTGCAGAGACTGTTCACCGTGGTGGTAGGCTGCCTCCTTGGACACATAACCGGCCAAC 11049 Query 117491 TGAGCCACCTTCATGTC-TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCG 117549 | | ||||| || ||| | ||||| | ||||| ||| | | | |||||||| Sbjct 11050 TCGACAACCTTTTGATCGTGAA-TGAGGTTTTGCTTGAAACAGCCGAACAGAACCTTGCG 11108 Query 117550 CTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 |||| ||||||||||||||| ||| | |||||||| || || |||| Sbjct 11109 TTGACCGGGCTTCAGACCATCCACCATGGACGGGATCGATCGAATGTTGTC 11159 Score = 93.3 bits (102), Expect = 5e-14 Identities = 214/314 (68%), Gaps = 10/314 (3%) Strand=Plus/Plus Query 152763 GAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGAT 152822 ||| | ||||| || | |||||||| || |||||||||||| || | |||||| Sbjct 11604 GAAAAAGTTGATGAGAAGACCCTTGATATGACTACCGTCAAGATCCTGATCAGCCATGAT 11663 Query 152823 CATCAGACGACCGTAGCGCAGGTCACGTAGTGAC-CCGTAGACCTTTCCATGTTGAAGCC 152881 ||||||| | ||||| |||| || | | || | |||||||||||| |||| || | Sbjct 11664 CATCAGATGGCCGTATCGCAAATC-CTTCGTATCGGTGTAGACCTTTCCGTGTTTGAGGC 11722 Query 152882 CGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTT--TCACCG-TGG 152938 | |||| ||| |||| ||| | ||||| || | ||| || ||| || ||| Sbjct 11723 CAAGGAACTTCTTGATGTTTTCGACTTCCTTGTTCT---TCAAGATTTGATCAGCGCTGG 11779 Query 152939 CATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGA-ACGCGTTGCGGCCT 152997 | || || || || || ||| || || | ||||| || |||| ||| | | || Sbjct 11780 CGTCACGGACGTTCAGCATCTTACCACGCAAGGGAAAGACACCGATACGGTTAGGATCCA 11839 Query 152998 ACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGC 153057 | | || | |||| || | |||||| || | || || ||||| ||||||| |||||| Sbjct 11840 AGATAGCAC-GACCAGCGACAGCAAGACCTCTGGCGGAATCACCTTCGGTGAGAATAAGG 11898 Query 153058 GTACAGTCGTGAGA 153071 ||||| || || || Sbjct 11899 GTACACTCTTGCGA 11912 Score = 89.7 bits (98), Expect = 6e-13 Identities = 194/288 (67%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 118013 AGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAGGCGGCCGTAC 118072 || ||||||||||| |||||| |||||| ||| | |||||||||||| ||||||| Sbjct 11620 AGACCCTTGATATGACTACCGTCAAGATCCTGATCAGCCATGATCATCAGATGGCCGTAT 11679 Query 118073 CGTAAATCTCTCAGGGAGTTATAAACCTTACCATGTTGGAGCCCGAGGATCTTTTTAAGG 118132 || ||||| || | | || ||||| || |||| ||| || |||| ||| || | | Sbjct 11680 CGCAAATCCTTCGTATCGGTGTAGACCTTTCCGTGTTTGAGGCCAAGGAACTTCTTGATG 11739 Query 118133 TTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGC 118192 || | ||||| || | | | || | | ||||||| || ||||| || | Sbjct 11740 TTTTCGACTTCCTTGTTCTTCAAGATTTGATCAGCGCTGGCGTCACGGACGTTCAGCATC 11799 Query 118193 TTACCCCGCAGTGGAAACACGCCAAACTTGTCACG-GCCCACAACGCTCAAGCCGGCAAT 118251 ||||| |||| ||||| || || | || | | || | | || | | || || | Sbjct 11800 TTACCACGCAAGGGAAAGACACCGATACGGTTAGGATCCAAGATAGCACGA-CCAGCGAC 11858 Query 118252 AGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTC 118299 |||||| | | || || ||||| ||||| | |||||| || ||||| Sbjct 11859 AGCAAGACCTCTGGCGGAATCACCTTCGGTGAGAATAAGGGTACACTC 11906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213551208400