Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq100 87.8 1e-12 >seq100 Length=149193 Score = 87.8 bits (96), Expect = 1e-12 Identities = 264/401 (66%), Gaps = 10/401 (2%) Strand=Plus/Minus Query 30061 CACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30117 ||| |||||||| | ||||| || || || || || |||| ||| || ||| || Sbjct 125605 CACATAAAACTGCGCAAACATG---TGACAAGGCGGCAGCACCATCTGGCTCATGTCCTT 125549 Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAG-GTCCA 30176 ||||||||| || | || || | | | || | |||||||| | || ||| ||| | Sbjct 125548 GGGGTTCCATGCACTCAGAATCAGTCTGCGATCGTACGGGTTGTTGCGGA-GAGTGTCGA 125490 Query 30177 CGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG-CCCTCATGTCCGTGTAC 30235 | | || || || ||||| ||| ||| | ||| || | | | || || ||| Sbjct 125489 TGATGCGCTGGAGTTGGTCCACGCCCTGCCCGGTGTAATCGGTCTCGCA-ATCGACGTAT 125431 Query 30236 TCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30295 || || || || |||| ||| ||||| || || || || || ||||| || |||| | | Sbjct 125430 TCGGCGCCAAAGTGCCGCCATTGGAAACCATATACGGGACCTAGGTCACCTTCTTTGCGG 125371 Query 30296 TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACC 30355 || | || | |||| | ||| | | ||| ||||| | |||||||| || || Sbjct 125370 TGGGAAAGACCGAGCATGTCGAGGAAGGCGCGGGATCCGTTACCATCCCAGATTTTGACT 125311 Query 30356 CCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCC 30415 |||| | |||||| ||||| || || | || |||||| || ||||| Sbjct 125310 CCCTGGGCGGAGAGCGTGGTGGAGGAGGTCGAGGCGGAGATGAACCAGAGGAGCTCGAGG 125251 Query 30416 ACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 | |||||| || ||||||| ||||||||| ||||| || Sbjct 125250 AGGACGGCTTTGGTGAAGACCCGCTTGGTCGTAAGGAGCGG 125210 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 29849 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCG 29908 || ||||| | ||| ||||| ||||| |||| ||||| | | || ||||| || || Sbjct 125904 CTCGGCTCGCGCTCCAGCTGCGTCTTGAGCGCGTCCACATGGTTGAGATAGACATGCGCA 125845 Query 29909 TCTCCCAGGTTGTGGA-CAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 29967 || |||| ||| ||| ||| ||||| | | | ||||| || | ||||| Sbjct 125844 TCGCCCATAACATGGGTCAAGCTC-CCCGGCACCAAGTCACACACGTGCGCGAGCATGTG 125786 Query 29968 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 30027 ||| || || | ||||||||| ||||||||||| || || || |||||||| | |||||| Sbjct 125785 CGTCAGCAGCGCGTAGCTGGCAATGTTAAAGGGCACACCCAGTCCCATGTCACACGACCT 125726 Query 30028 CTGGTAGAGCTGACA 30042 || || | ||| || Sbjct 125725 TTGATACAACTGGCA 125711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406308627216936