Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq18 140 2e-28 seq81 91.5 9e-14 >seq18 Length=383124 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || |||| |||||| || |||||||||||||| |||||||| ||||| || Sbjct 57910 GCCGCCACGGAGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGA 57851 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || | || ||||| ||||| || | |||||| ||||| ||||| Sbjct 57850 GAGGGTCCGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGG 57791 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||||||||| || ||| || ||| || || ||| | Sbjct 57790 GATACCCTCCTTGTCCTGGATCTTTTG-CTTCACGTTATCAATCGTATCCGAAGACTCGA 57732 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || ||||| || || || || || || || ||||||||||| Sbjct 57731 CTTCCAGCGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | |||||| || || ||||||||||| |||||||| || || || Sbjct 57681 CCACCACGAAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAG 57622 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || || || || || | |||||| || || || || Sbjct 57621 AGGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGG 57562 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||||||| ||| ||| | || ||||| ||| || Sbjct 57561 ATACCCTCCTTGTCCTGGATCTTTTGCTTT-ACGTTGTCGATGGTGTCGGAAGACTCAAC 57503 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || ||||| || ||||| | ||| || || ||||||||||| Sbjct 57502 CTCGAGAGTAATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546 ||||| | || | ||| || || |||||| |||||||| || || | |||||| | Sbjct 57444 AGACGAAGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTCAAAGTG--C 57387 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | |||||||||| || || ||||| || || | |||||| || || || || | |||| Sbjct 57386 GGCCGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATGCCCT 57327 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCAC 34664 |||||||| ||||||||| || ||| | || ||||| || | ||||| || | Sbjct 57326 CCTTGTCTTGGATCTTTTG-CTTGACGTTGTCGATAGTGTCGGACGAT-TCCACCTCAAG 57269 Query 34665 GGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || || ||||| | || || || || || ||||| Sbjct 57268 GGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 >seq81 Length=180685 Score = 91.5 bits (100), Expect = 9e-14 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| || ||||| || || || || || || | || ||||| || Sbjct 25139 TGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGC 25198 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | ||||| ||||| || || | ||||||||||| |||||| Sbjct 25199 TTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTC 25258 Query 34624 TGTTTTAACGATAAAATTGTGTCTTCGCT---CTCCACTTCCACGGTTATCGTTTTACCG 34680 || || | || ||| ||||| |||||| || | ||| || || || || Sbjct 25259 TGCTTGACATTGTCGATGGTG---TCGCTAGACTCCACCTCAAGGGTGATAGTCTTGCCC 25315 Query 34681 GTTAACGTTTTCACAAAAATCTGCATG 34707 || | || ||||| || ||||||||| Sbjct 25316 GTGAGGGTCTTCACGAAGATCTGCATG 25342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728226795414