Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq18 158 1e-33 >seq18 Length=383124 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| ||||||||| | || || ||||| |||||| ||||| Sbjct 57227 ATGCAAATCTTCGTCAAGACTCTTACCGGCAAGACCATCACCCTTGAGGTGGAATCGTCC 57286 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||||| || |||||||| || ||||| || |||||||| Sbjct 57287 GACACTATCGACAACGTCAAGCAAAAGATCCAAGACAAGGAGGGCATTCCTCCCGATCAG 57346 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | |||||| | || | ||| |||||| Sbjct 57347 CAGCGTCTCATTTTCGCCGGCAAGCAGCTTGAAGACGGCCGCACTTTGAGCGACTACAAC 57406 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||| | ||| | ||| | ||| | || ||||| || Sbjct 57407 ATTCAGAAGGAGTCTACCCTTCATCTCGTTCTTCGTCTACGCGGTGGTAT 57456 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | |||||||| || || || | ||| Sbjct 57455 ATGCAGATTTTCGTTAAGACGCTTACCGGCAAGACGATTACTCTCGAGGTTGAGTCTTCC 57514 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| || || ||||| || || || ||||| ||||| Sbjct 57515 GACACCATCGACAACGTAAAGCAAAAGATCCAGGACAAGGAGGGTATCCCACCTGATCAG 57574 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || | || || || ||| | ||||| |||||| Sbjct 57575 CAGCGTCTCATTTTCGCTGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCCGACTACAAC 57634 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||| ||| | || ||||| | ||| | || ||||| || Sbjct 57635 ATTCAGAAGGAGAGCACCCTGCACTTGGTGCTCCGTCTTCGTGGTGGTAT 57684 Score = 123 bits (136), Expect = 2e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||||||| | || || || || || || |||| || | ||||| | ||||| | Sbjct 57021 TGACCGGCAAGACCATCACCCTCGAGGTCGAGTCGTCGGATACCATTGACAATGTCAAGC 57080 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 |||| ||||| ||||| || ||||| || ||||| || ||||| || || | ||||||| Sbjct 57081 AAAAGATTCAGGACAAGGAGGGCATTCCCCCCGACCAGCAGCGCTTGATTTTTGCCGGCA 57140 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | || ||||| || | ||| ||||||| |||||||| || |||||||| ||| | | Sbjct 57141 AGCAGTTGGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCTACCCTCC 57200 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | | || | || |||| ||||| || Sbjct 57201 ACCTTGTCCTCCGCCTGCGCGGTGGTAT 57228 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | ||||| || ||||| || | || Sbjct 57683 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATTACGCTGGAAGTCGAGTCTTCG 57742 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | || || ||||| || || ||||| || || || || || || || Sbjct 57743 GATACGATTGATAACGTGAAGCAAAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 57802 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || ||||| || | |||| | || ||||||||| Sbjct 57803 CAGCGTCTGATCTTTGCTGGTAAGCAGTTGGAGGATGGCCGGACCCTCTCTGATTACAAC 57862 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||| || | || ||||| |||| | || || ||| Sbjct 57863 ATTCAGAAGGAGAGCACTCTTCACTTGGTGCTGCGCCTCCGTGGCGGC 57910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916453740160