Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq81 163 7e-35 seq18 161 2e-34 seq43 138 3e-27 seq15 86.0 1e-11 >seq81 Length=180685 Score = 163 bits (180), Expect = 7e-35 Identities = 166/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||| ||| || |||||||| || || | ||||| | ||||| Sbjct 25130 AGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 25189 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || |||||||| || | || ||||||||| Sbjct 25190 TCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 25249 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTCGAGAGTGATC 211079 |||||||| || || || || ||||||||||| ||| || ||||| || ||||| Sbjct 25250 TGGATCTTCTGCTTGACATTGTCGATGGTGTCGCTAGA---CTCCACCTCAAGGGTGATA 25306 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| ||||| || || | |||||| Sbjct 25307 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 25341 >seq18 Length=383124 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| || ||| ||| || || ||||| || || | ||||| Sbjct 57676 ACGAAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGT 57617 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || ||||| || || || || || ||||| || | || Sbjct 57616 GCGACCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGGATACC 57557 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||||| || ||||| ||||||||||| || ||||||||||| Sbjct 57556 CTCCTTGTCCTGGATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAG 57497 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| || || || ||||| || || | |||||| Sbjct 57496 AGTAATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||||||| ||| || || ||||| ||||| | ||||||| ||||| Sbjct 57894 AGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTCCGGCCATCC 57835 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || ||||| || || || |||||||| || | || ||||||||| Sbjct 57834 TCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTCC 57775 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||||| |||||||| || || || || || || || || || || |||||| Sbjct 57774 TGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGACTTCCAGCGTAATCGTC 57715 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | |||||| Sbjct 57714 TTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Score = 147 bits (162), Expect = 5e-30 Identities = 162/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || || ||||| || ||||| || || ||||| || || | ||| | | | || || Sbjct 57438 AGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTCAAAG-TGCGGCCGTC 57380 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||| ||||||||||| ||||| || || || || || || ||||||| || |||||||| Sbjct 57379 TTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTGTC 57320 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||||| || ||||| ||||| ||||| || ||| ||||| || ||||| || Sbjct 57319 TTGGATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCACCTCAAGGGTGATGGT 57260 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || |||||||| || || | ||||| Sbjct 57259 CTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 Score = 145 bits (160), Expect = 2e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || || ||||| || |||||||| || || | |||||| | ||||| Sbjct 57210 AGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 57151 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| || || || | ||| || ||||| || |||| || ||||||||| Sbjct 57150 TCCAACTGCTTGCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 57091 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||||| || || || || ||||| || || || |||||||| ||||| ||| Sbjct 57090 TGAATCTTTTGCTTGACATTGTCAATGGTATCCGACGACTCGACCTCGAGGGTGATGGTC 57031 Query 211083 TTTCCCGT 211090 || || || Sbjct 57030 TTGCCGGT 57023 >seq43 Length=285406 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| || || || Sbjct 263376 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATC 263435 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || ||||| || || | || ||||||||||| ||||| || || || || || Sbjct 263436 AGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTGACATTGTCA 263495 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| ||||||||||| ||||| ||||| |||||||| ||||| || || Sbjct 263496 ATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 263554 >seq15 Length=408871 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 ||||| ||||||||||| | || || || || || |||||||||| | || || || Sbjct 171747 CTTCCCAAGAAGCACGGTCGTGGTGGTCAGTCCGCCCTGCGTTTTGCCCGTCTCCGTGAG 171688 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAA 139926 |||||| | |||||||| | | || || || || || | |||||||| |||| Sbjct 171687 GAAAAGCGTCACAACTATGTCCGCAAGGTCGCCGAATTGGCTGTCCAGTGTTTCATCACC 171628 Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981 || ||| | | ||| | ||| | |||||||| |||||||| || ||||||| Sbjct 171627 AACGACAGGCCTAACGTTGCCGGTCTCGTTTTGGCTGGTTCCGCCGATTTCAAGA 171573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159146683114670