Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq81 120 3e-22 seq18 93.3 4e-14 >seq81 Length=180685 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || || |||||||| || || || || || |||| || || || | Sbjct 25126 GCGAAGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 25185 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || |||||||| ||||| || || || || ||||||||||| | ||| | || ||| || Sbjct 25186 ATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTT 25245 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| ||||| |||| | | | || ||||| |||||||| || | ||||| Sbjct 25246 GTCCTGGATCTTCTGCTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGAT 25305 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || ||||| || || || || ||||| ||||| Sbjct 25306 AGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 25341 >seq18 Length=383124 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || |||||||| || || || || ||||| | || || || | Sbjct 57898 GCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGTCCGGCC 57839 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || | ||| || || ||||| || |||||||||||||| | || | | ||| || Sbjct 57838 ATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTT 57779 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| || || || | | | | |||||| ||||| || |||| ||| || Sbjct 57778 GTCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGACTTCCAGCGTAAT 57719 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||||| || || || || || ||||| Sbjct 57718 CGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 39128 CGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTT 39187 |||| |||||||| ||||| || || || ||||||||||| |||| || | || ||| | Sbjct 57383 CGTCTTCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATGCCCTCCT 57324 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTG 39246 |||| ||| || || |||| ||| | | | || ||| ||| ||||| || | ||| Sbjct 57323 TGTCTTGGATCTTTTGCTTGA-CGTTGTCGATAGTGTCGGACGATTCCACCTCAAGGGTG 57265 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || || || || || || ||||||||||| Sbjct 57264 ATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || |||||||| || || || || || |||| || || || | || || Sbjct 57664 CACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGTGCGACCATCCTC 57605 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| || || || || || ||||||||||| || |||||| | | ||| |||||| Sbjct 57604 GAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGG-ATACCCTCCTTGTCCT 57546 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| || || || | ||| | | | || ||| ||||| || || | || || | Sbjct 57545 GGATCTTTTGCTTTA-CGTTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTAATCGTC 57487 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || ||||| ||||| || || ||||| Sbjct 57486 TTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543725838854