Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq18 143 6e-29 seq81 125 2e-23 seq43 120 7e-22 seq86 87.8 4e-12 >seq18 Length=383124 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || || || || || || || || | ||||| ||| |||||| | || ||| Sbjct 57438 AGAACGAGATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGCTCAAAGTGCGGCCGTCT 57379 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||| || || || || || ||||| ||||| || ||||||||| Sbjct 57378 TCAAGCTGCTTGCCGGCGAAAATGAGACGCTGCTGATCGGGAGGAATGCCCTCCTTGTCT 57319 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||||||||| || ||||| ||||| || | |||||| || | ||||| ||| Sbjct 57318 TGGATCTTTTGCTTGACGTTGTCGATAGTGTCGGACGATTCCACCTCAAGGGTGATGGTC 57259 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | |||||| Sbjct 57258 TTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 57227 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| |||||| || || || | |||||||| | | || Sbjct 57904 ACGGAGGCGCAGCACCAAGTGAAGAGTGCTCTCCTTCTGAATGTTGTAATCAGAGAGGGT 57845 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | |||||| ||||| ||||| || || || ||||| ||||| ||||| Sbjct 57844 CCGGCCATCCTCCAACTGCTTACCAGCAAAGATCAGACGCTGCTGGTCAGGCGGGATACC 57785 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| ||||||||||||||||| || || || || || | || || || | Sbjct 57784 CTCCTTGTCCTGGATCTTTTGCTTCACGTTATCAATCGTATCCGAAGACTCGACTTCCAG 57725 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| ||||||||||||||||| || || | ||| | ||||| Sbjct 57724 CGTAATCGTCTTGCCCGTCAAGGTCTTGACGAAAATCTGCAT 57683 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| || || || || |||| ||||| |||| | || | ||||| Sbjct 57210 AGGACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 57151 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || || || || | || || |||||||| ||||| || |||||||| Sbjct 57150 TCCAACTGCTTGCCGGCAAAAATCAAGCGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 57091 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||||||||| ||| || ||||| || || | || || || | ||||| ||| Sbjct 57090 TGAATCTTTTGCTTGACATTGTCAATGGTATCCGACGACTCGACCTCGAGGGTGATGGTC 57031 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 57030 TTGCCGGTCA 57021 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| || ||| || || || | ||||| |||| | || Sbjct 57676 ACGAAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAGAGGGT 57617 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| |||||||| || || || || || || || || ||||| Sbjct 57616 GCGACCATCCTCGAGCTGCTTTCCAGCGAAAATGAGACGCTGCTGATCAGGTGGGATACC 57557 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||||||||| || ||||||||||| || | || || || | Sbjct 57556 CTCCTTGTCCTGGATCTTTTGCTTTACGTTGTCGATGGTGTCGGAAGACTCAACCTCGAG 57497 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||||||||| || | || || | ||| | ||||| Sbjct 57496 AGTAATCGTCTTGCCGGTAAGCGTCTTAACGAAAATCTGCAT 57455 >seq81 Length=180685 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||| || || |||| ||||| |||| | || | ||||| Sbjct 25130 AGCACGAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 25189 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || |||||||| Sbjct 25190 TCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 25249 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||| ||| ||||||||||| | ||||| || | ||||| ||| Sbjct 25250 TGGATCTTCTGCTTGACATTGTCGATGGTGTCGCTAGACTCCACCTCAAGGGTGATAGTC 25309 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 25310 TTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 25341 >seq43 Length=285406 Score = 120 bits (132), Expect = 7e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | || | ||||| || |||||||| ||||| || || Sbjct 263376 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAAATC 263435 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||||||||| ||||| |||||||| || ||||| ||||| ||| || Sbjct 263436 AGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCTGCTTGACATTGTCA 263495 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||| |||| || || || | |||||| ||||||||||| Sbjct 263496 ATCGTGTCGGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGT 263539 >seq86 Length=170212 Score = 87.8 bits (96), Expect = 4e-12 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 |||||||| |||| || | ||| || ||||||| |||||||| ||||| ||| Sbjct 127043 TTCTGGTTACTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCA 126984 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | || || |||| ||| || |||||| | || || || || ||| | | |||| Sbjct 126983 GTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGACGGTCTTGCGACCCTTG 126924 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 |||||| | ||||||||||||||||| | || || || | ||||| | ||| | || Sbjct 126923 CCTTCCTTTTCGTACTTTTCGTACAGAGCTTCGAACTCGTCACCGTAAACGTCGGCAAGG 126864 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || || || | ||||| | |||| |||| | || | || || | ||||||| Sbjct 126863 CCAGGGCACTCGTGAGGGCACATGAGAGTCCACTGGCCGTTCTGCTCAACACGCTTCATG 126804 Query 193740 AAGAGGTC 193747 || || || Sbjct 126803 AAAAGATC 126796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192525730008452