Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq100 96.9 3e-15 >seq100 Length=149193 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 29621 CTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCA 29680 || ||||| | ||| ||||| || | |||| ||||| |||| || ||||| || ||| Sbjct 125904 CTCGGCTCGCGCTCCAGCTGCGTCTTGAGCGCGTCCACATGGTTGAGATAGACATGCGCA 125845 Query 29681 TCTCCCAGGGTGTGGA-CAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 29739 || |||| ||| ||| ||| ||||| | | | ||||| || | ||||| Sbjct 125844 TCGCCCATAACATGGGTCAAGCTC-CCCGGCACCAAGTCACACACGTGCGCGAGCATGTG 125786 Query 29740 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCT 29799 ||| || || | ||||||||| |||||||||||||| || || |||||||| | ||||| Sbjct 125785 CGTCAGCAGCGCGTAGCTGGCAATGTTAAAGGGCACACCCAGTCCCATGTCACACGACCT 125726 Query 29800 CTGGTAGAGCTGGCA 29814 || || | |||||| Sbjct 125725 TTGATACAACTGGCA 125711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406161427859188