Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neurospora_20crassa_20[genbank_20GCA_5F000786625.1_202014-11-25] 358 sequences; 40,416,174 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq100 93.3 3e-14 >seq100 Length=149193 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 27115 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCG 27174 || ||||| | ||| ||||| ||||| |||| ||||| || | || ||||| || || Sbjct 125904 CTCGGCTCGCGCTCCAGCTGCGTCTTGAGCGCGTCCACATGGTTGAGATAGACATGCGCA 125845 Query 27175 TCTCCCAGGGTGTGGA-CAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 27233 || |||| ||| ||| ||| ||||| | | | ||||| || | ||||| Sbjct 125844 TCGCCCATAACATGGGTCAAGCTC-CCCGGCACCAAGTCACACACGTGCGCGAGCATGTG 125786 Query 27234 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 27293 ||| || || | ||||||||| ||||||||||| || || || |||||||| | |||||| Sbjct 125785 CGTCAGCAGCGCGTAGCTGGCAATGTTAAAGGGCACACCCAGTCCCATGTCACACGACCT 125726 Query 27294 CTGGTAGAGCTGACA 27308 || || | ||| || Sbjct 125725 TTGATACAACTGGCA 125711 Score = 89.7 bits (98), Expect = 4e-13 Identities = 249/377 (66%), Gaps = 4/377 (1%) Strand=Plus/Minus Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407 ||| || || || || |||| ||| || ||| ||||||||||| || | || || | Sbjct 125584 GTGACAAGGCGGCAGCACCATCTGGCTCATGTCCTTGGGGTTCCATGCACTCAGAATCAG 125525 Query 27408 GCGCCTGTCTTCTGGGTTGTTCCTGATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCC 27466 | | || | |||||||| | || ||| ||| | | | || || || ||||| | Sbjct 125524 TCTGCGATCGTACGGGTTGTTGCGGA-GAGTGTCGATGATGCGCTGGAGTTGGTCCACGC 125466 Query 27467 CCATCCCCGAGTAGTC-TACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGG 27525 || ||| | ||| || | | || || ||| || || || || |||| ||||||| Sbjct 125465 CCTGCCCGGTGTAATCGGTCTCGCA-ATCGACGTATTCGGCGCCAAAGTGCCGCCATTGG 125407 Query 27526 AACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAA 27585 || || || || || || ||||| || |||| | ||| | || | |||| | Sbjct 125406 AAACCATATACGGGACCTAGGTCACCTTCTTTGCGGTGGGAAAGACCGAGCATGTCGAGG 125347 Query 27586 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 27645 ||| | | ||| ||||| | |||||||| || || |||| |||||||| ||||| Sbjct 125346 AAGGCGCGGGATCCGTTACCATCCCAGATTTTGACTCCCTGGGCGGAGAGCGTGGTGGAG 125287 Query 27646 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 27705 || || | || |||||| || ||||| | |||||| || ||||||| | Sbjct 125286 GAGGTCGAGGCGGAGATGAACCAGAGGAGCTCGAGGAGGACGGCTTTGGTGAAGACCCGC 125227 Query 27706 TTGGTCGTGAGGAGGGG 27722 |||||||| ||||| || Sbjct 125226 TTGGTCGTAAGGAGCGG 125210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369505587793898